Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g2057 ATGCAAATCTGTTTAACCAATTCAGCCTTCAGGACCCCTTCAATTTTCCCATCTCATCTATCCATTTCAACGCAAAAGCCATTAAGCCACAAAATTCCAGTGCAGACCCACTTGAATGCTGCCAAAAGGTCTGAATATTTATCCGAAATCAGCAAAGCAATCGATCAAGAAGAACAGTACCGCATAGCTCGGTCTCAGGTTCTACGCAAAGGTGTCGACTTGGAAGGTTACTCGATTGAGGGGCTTTCTATTGGTGGACAAGAGACCTGTGTGATAATTCCCGAGTTTAAGTGTGCTTTCGATATAGGGAAGTGCCCTACGAGGGCTATTCAGCAAAACTTCGTTTTCATTACTCATGCTCATCTTGATCACATTGGAGGGCTGCCAATGTATGTAGCTAGCCGTGGTTTATACAATTTAAAACCTCCCACTGTGTTCGTGCCTCCTTGCATCATGGAGGATGTTGAGAAGCTGATGGATATACACAGGACGATGGGCCAAGTTGAATTAAACCTTGAACTGGTTGCATTGGACGTAGGGGAAACCTATGAGTTACGTAATGACCTTGTTGTCCGACCATTCAGAACCCAACATGTAATACCCAGCCAGGGCTATGTAGTGTATTCAGTCAGGAAAAAACTCAAGAAACAGTATGTGCACCTTAAAGATAAAAGGAGTCAAATTGAAAAAAAGAAGAAGTCCGGTGTTGAGATTACAGACACTGTATTATCTCCAGAGGTGGCCTTCACCGGTGATACAACTGCAGATTTTATGCTTGATCCACACAATGCAGATGCACTGAGGGCAAAAATTCTTATAACTGAGGCAACTTTCCTGGATGAGTCATTCAGCGTAGAACATGCTCGGCAACGCGGCCATACACATTTATCCGAGCTCATTGGAAATGCTCAGTGGATTCACAACAAAGCTGTTTTATTAACTCATTTTTCGTCAAGATATAAAATAGAGGACATTCGTCAAGCTGCATCAAAATTGCAGTCAAAGCTATCTGCAAAAGTGGTTCCTCTCACCGAAGTTGTGGTTTATATTATGAGGAAAAGGGAGAGGGAAAATCCTTGTGGGGTATGTGGCCACTATCACAAATACGAAGAAGGGGAAGTTTGTTCTATTTGTGGACACCGCATTCCGGCAGCATCGGAGAAAACTTCAATCCGAGTCAGCGCCTTTCCTTCCGTGATTTTGCCAGAATTCCTTTACTTGGGCAGTTATGATAACGCGTCACGGTCGGAGCTTCTTAAGACTCAGGGAATCTCTCGAATCCTCAATACGGTTCCTTCTTGTCAAAATCTCTACAGAAACTCATTTACCTATCACTGTCTTCCAGATGACAAAACTTTGCCATTTAATGAAGCGATTCAGTTTATAGAGGAATGTGAGAAGGACAAGGCCCGGGTTCTGGTTCATTGCATGTCAGGGAAGAATAGGTCCCCAGCAATTGTGATTGCTTACCTGATGAAGGCCAAGGGTTGGAGACTCCCCCAGAGCTACCAATGGGTAAAAGAAAGGAGGCCTTCTGTAGAATTAACTGAAGGGGTTTACCAGCAACTGCAGGAGTATGAGTGCAAGATCTATGGATCGGTTGACACTGGCAGCTCTCCTTTGTTCGGGTTCTCAGCTCCAGCACCTCCTCCCATTAGCTTTGGCTACCCAAAAATTAATGATCCAGCAGCTCCTCTTCCTGCCTTCAGCAATCCTGGAGCTCCCTCAATCTTTGCCTCAGCTCCCTTAGATGTTCCCCCGACAGACTTTACTTTTGGAGCTGGCCACACTCAAAACATTGTGATTGGGAGCCCATTTAATGCCAATCCACCAAATCGAACTGGCAGCGACACCCAAATGGACGGTTCTTGA 1872 0.4476 MQICLTNSAFRTPSIFPSHLSISTQKPLSHKIPVQTHLNAAKRSEYLSEISKAIDQEEQYRIARSQVLRKGVDLEGYSIEGLSIGGQETCVIIPEFKCAFDIGKCPTRAIQQNFVFITHAHLDHIGGLPMYVASRGLYNLKPPTVFVPPCIMEDVEKLMDIHRTMGQVELNLELVALDVGETYELRNDLVVRPFRTQHVIPSQGYVVYSVRKKLKKQYVHLKDKRSQIEKKKKSGVEITDTVLSPEVAFTGDTTADFMLDPHNADALRAKILITEATFLDESFSVEHARQRGHTHLSELIGNAQWIHNKAVLLTHFSSRYKIEDIRQAASKLQSKLSAKVVPLTEVVVYIMRKRERENPCGVCGHYHKYEEGEVCSICGHRIPAASEKTSIRVSAFPSVILPEFLYLGSYDNASRSELLKTQGISRILNTVPSCQNLYRNSFTYHCLPDDKTLPFNEAIQFIEECEKDKARVLVHCMSGKNRSPAIVIAYLMKAKGWRLPQSYQWVKERRPSVELTEGVYQQLQEYECKIYGSVDTGSSPLFGFSAPAPPPISFGYPKINDPAAPLPAFSNPGAPSIFASAPLDVPPTDFTFGAGHTQNIVIGSPFNANPPNRTGSDTQMDGS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g2057 623 Gene3D - 77 349 IPR036866 -
Lele28g2057 623 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 397 531 IPR029021 -
Lele28g2057 623 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 453 521 IPR000387 GO:0016311|GO:0016791
Lele28g2057 623 Coils Coil 211 231 - -
Lele28g2057 623 Pfam Beta-lactamase superfamily domain 113 316 IPR001279 -
Lele28g2057 623 SUPERFAMILY Metallo-hydrolase/oxidoreductase 98 332 IPR036866 -
Lele28g2057 623 CDD DSP_plant_IBR5-like 397 526 - -
Lele28g2057 623 FunFam Protein-tyrosine-phosphatase IBR5 386 536 - -
Lele28g2057 623 PANTHER TRNASE Z TRZ1 39 345 - -
Lele28g2057 623 ProSitePatterns Tyrosine specific protein phosphatases active site. 474 484 IPR016130 GO:0016311|GO:0016791
Lele28g2057 623 CDD RNaseZ_MBL-fold 82 276 - -
Lele28g2057 623 SMART ptp_7 433 535 IPR003595 -
Lele28g2057 623 Pfam Dual specificity phosphatase, catalytic domain 405 527 IPR000340 GO:0008138|GO:0016311
Lele28g2057 623 Gene3D Protein tyrosine phosphatase superfamily 390 535 IPR029021 -
Lele28g2057 623 SMART dsp_5 396 529 IPR020422 GO:0006470|GO:0008138
Lele28g2057 623 MobiDBLite consensus disorder prediction 601 623 - -
Lele28g2057 623 ProSiteProfiles Dual specificity protein phosphatase domain profile. 396 532 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g2057 Lele-ChrLele28 23609932 23621259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g2057 351 516 Protein tyrosine phosphatase (PTP) family AT2G04550 73.964 2.34e-92 281