Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g2048 ATGAAAGTGGAAGAACTCCAATTCGAGTTCGATCATCTCCACCACCAGCAGCGGCAGAGTAAAGAGAAGACCCATTTGGGTGTCGCCGAACTCTTGCCTCCCATCGTCTCTACCGATGATGATTGTGGTGGGTTTGACAAGGTCATTGATGGCGAAGACGAGGATTGTTTCGTCCAGCCCATCAATTTCGCGATGGTAGATAATGGCATTTTCCGGTCCGGCTTCCCTCAACCCGCCAACTTTTCCTTCCTCAAATCCCTCGGTCTCCGCTCCATCGTATATCTCTGTCCCGAGCCGTATTCGGAGGAAAGTTTAGAGTTCTTGAAGTCAAATGGGATCGAGCTTCATCAATTTGGGATTGATGGTCACAAGGAGCCTTTTGTAAGCATCCCAGAGGACACAATCTGTCAGGCCCTCAGAGTTGTCCTTGATGTGAAGAACCACCCAGTTTTAATTCACTGTAAACGGGGAAAGCACCGAACGGGTTGCGTGGTAGGCTGCTTCAGGAAGTTACAAAAATGGTGCTTGTCATCAGTGTTTGATGAGTACCTACGCTTTGCAGCAGCCAAGGCAAGAGTTGCAGATCTGAGGTTCGTGGAATCGTTTGATATTTCGAGCTTGTCGGCACATTTGCCCATGTCATTCTCATTCTCACAGTTGTGA 663 0.4857 MKVEELQFEFDHLHHQQRQSKEKTHLGVAELLPPIVSTDDDCGGFDKVIDGEDEDCFVQPINFAMVDNGIFRSGFPQPANFSFLKSLGLRSIVYLCPEPYSEESLEFLKSNGIELHQFGIDGHKEPFVSIPEDTICQALRVVLDVKNHPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYLRFAAAKARVADLRFVESFDISSLSAHLPMSFSFSQL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g2048 220 CDD PFA-DSP_Siw14 57 203 - -
Lele28g2048 220 ProSitePatterns Tyrosine specific protein phosphatases active site. 152 162 IPR016130 GO:0016311|GO:0016791
Lele28g2048 220 PRINTS Plant and fungal dual specificity phosphatase signature 94 107 IPR020428 GO:0016791
Lele28g2048 220 PRINTS Plant and fungal dual specificity phosphatase signature 113 127 IPR020428 GO:0016791
Lele28g2048 220 PRINTS Plant and fungal dual specificity phosphatase signature 130 144 IPR020428 GO:0016791
Lele28g2048 220 PRINTS Plant and fungal dual specificity phosphatase signature 57 74 IPR020428 GO:0016791
Lele28g2048 220 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 58 202 IPR029021 -
Lele28g2048 220 Gene3D Protein tyrosine phosphatase superfamily 56 206 IPR029021 -
Lele28g2048 220 PANTHER TYROSINE-PROTEIN PHOSPHATASE 46 209 - -
Lele28g2048 220 Pfam Tyrosine phosphatase family 58 208 IPR004861 -
Lele28g2048 220 FunFam probable tyrosine-protein phosphatase At1g05000 56 206 - -
Lele28g2048 220 ProSiteProfiles Dual specificity protein phosphatase domain profile. 62 215 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g2048 Lele-ChrLele28 23526879 23530322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g2048 55 219 Protein tyrosine phosphatase (PTP) family AT4G03960 68.485 4.01e-82 241