Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g2019 ATGCAATCCGACAATGGCAAGTTATTTATTGGTGGGATATCATGGGACACAAATGAAGAGCGGCTTGGAGAGTATTTCAGTTCTTATGGGGAGATTGTGGAAGCAGTGATTATGAAGGATCGGACAACAGGTAGAGCCCGTGGATTCGGTTTTGTAGTTTTTGCAGACCCAACTGTTGCAGAGAGAGTCATAAAAGAGAAGCACTGCATTGATGGAAGGATGGTTGAGGCCAAGAAGGCTGTTCCAAGGGATGACCAGAGCATACTGAGTAGAAACAGTGGTAGCAACCATGGTTCTCCTGGTCCAGGCCGCACAAAAAAGATATTTGTTGGTGGTTTAGCATCTACAGTTACAGAGAGTGATTTCAAGAAGTACTTTGAACAATTTGGGTCAATAACAGATGTTGTAGTTATGTACGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAAGCTGTTGAGAAGGTCTTACTTAAGACCTTCCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCGTGCAGTTCCTAAGGACCTATCACCTGGGCCAAACCGAAGCCCACTCACTGGATATAACTATGGTGTGAAAAGGGTCAATAGTTTCCTAACTGGCTTCACCCAGGGCTATACTCCAGGTGCTGTTGGAGGCTTTGGACTCAGGGTGGATGGTAGCTTCAGTCCTGTTGCAAGTGACCACCGTGGGTTTTCGCCTTTTGGATCTGGTTATGGAATGAATATGAATTTTGAGCCTGGTTTGAGCCCTGGATTTGGAGGGAATGCAAATTTCAATAACAATCTTAGTTATGGTCGGGGAATAAATCCATATTATATTGGAAGCTCAAGTAGGTTTGGGAATCCTATTGAGTATGATGGTAATAATGGAGGAAACAATTCTTTCTTCAGCTCAGGAACTCGGAACTTGTGGGGAACTGGTAGCCTTAATTATGGAACAAGTTCTGCTAATTCCAATGCATACACAGGAACAGGAAGGGGGAATGTTGGAGGAAATATTTATGGCAATGCTGGAGTCAATTGGGGTTCTTCAGCAATTTCTGCTCAAGGCACAATGAACAATGCTTCACAGAGTAGTGGTGGTAACCTTGGGTTTTGGGGAGATGACAATAGTTATGGTTTGGGAACTGGAGGGTATGGACGAAACAGTGGTACAAATATTGCTCCAACATCATCACATTCTGCATCAAATGGTGGTTCTGATGGAGCTTTTGCTGATTTATACAATAATAGTTCAGTTTACGGGGACCCCACTTGGCGGTCTTCAAATTCTGAGCTAGATGGATCTGGTCCCTTTGGTTATGTACTCGGTGCTGCAGCTTCAGATGTTTCTGCTAAAAGCTCTCCTGGTTATGTTGGTGGTTATACTGGTAATAAGAGACAGCCAAATAGGGGAATTGTTACATAG 1440 0.4347 MQSDNGKLFIGGISWDTNEERLGEYFSSYGEIVEAVIMKDRTTGRARGFGFVVFADPTVAERVIKEKHCIDGRMVEAKKAVPRDDQSILSRNSGSNHGSPGPGRTKKIFVGGLASTVTESDFKKYFEQFGSITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKDLSPGPNRSPLTGYNYGVKRVNSFLTGFTQGYTPGAVGGFGLRVDGSFSPVASDHRGFSPFGSGYGMNMNFEPGLSPGFGGNANFNNNLSYGRGINPYYIGSSSRFGNPIEYDGNNGGNNSFFSSGTRNLWGTGSLNYGTSSANSNAYTGTGRGNVGGNIYGNAGVNWGSSAISAQGTMNNASQSSGGNLGFWGDDNSYGLGTGGYGRNSGTNIAPTSSHSASNGGSDGAFADLYNNSSVYGDPTWRSSNSELDGSGPFGYVLGAAASDVSAKSSPGYVGGYTGNKRQPNRGIVT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g2019 479 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Lele28g2019 479 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Lele28g2019 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Lele28g2019 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 67 IPR000504 GO:0003723
Lele28g2019 479 MobiDBLite consensus disorder prediction 81 105 - -
Lele28g2019 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Lele28g2019 479 Gene3D - 103 189 IPR012677 -
Lele28g2019 479 MobiDBLite consensus disorder prediction 86 100 - -
Lele28g2019 479 MobiDBLite consensus disorder prediction 456 479 - -
Lele28g2019 479 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Lele28g2019 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Lele28g2019 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Lele28g2019 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lele28g2019 479 Gene3D - 4 88 IPR012677 -
Lele28g2019 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lele28g2019 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Lele28g2019 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lele28g2019 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g2019 Lele-ChrLele28 23255373 23259722 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g2019 8 281 Eukaryotic Initiation Factors Gene Family AT1G71770 26.299 4.36e-15 75.9