Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g2017 ATGAGGCATCTCAGTTGTTTGATAAATGATAAAATGCAATCGGATAATGGCAAGTTATTTATTGGTGGAGTATCATGGGACACAAATGAAGAGCGACTTAGGGAGTATTTCAGTTCTTATGGAGAGGTTGTGGAAACAGTTATAATGAAGGATCGGACAACTGGTAGAGCTCGTGGATTTGGTTTTGTAGTTTTTGCTGACCCAGCTGTTGCAGATAGAGTTATAAAAGAGAAGCACAACATTGATGGGAGGCTGGTTGAGGCAAAGAAGGCTGTTCCCAGAGATGACCAGAACATACTGAACAGAAGCAGTAGTAGCATCCAGGGTTCTCCTGGTCCAGGCCGCACAAGAAAGATATTTGTAGGAGGTTTGGCATCAACAGTTACGGAGAGTGATTTCAAGAAGTACTTTGATCAATTTGGGACAATAACAGATGTTGTAGTGATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAAGCTGTTGAGAAGGTCTTAGTTAAGACATTTCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCGGGCAGTTCCTAAGGAATTATCAACAGGACCAAACCGCAGCCCAATCAGTGGATATGATTACGGTATGGGTAGGGTCAATAGTTTCCTAAATGGCTTCACTCAGGGGTATACTCCAAGTGCTGTTGGAGGCTATGGACTGAGGATGGATGGTAGGTTCAGTCCTGCTACAAGTGGTCGAAGTGGATTTGCTCCATTTGGATCTGGTTATGGAATGAGTATGAATTTTGAGCTTGGCTTGAACCCTGAATTTGGAGGGAATGCAAACTTCAATAGCAATCTTAGCTATGCTCGGGGATTAAATCCTTATTATGTTGGCAGCTCAAATAGGTTTGGGAATCCTATTGGGTATGATGGTGGTAATGGAGGAAACAATTCTTTCTTCAGCTCCATGAGTAGAAACTTGTGGGGGACTGGTGGTCTTAATTATGGAACGGGCTCTGCAAATTCCAATAATGCGTACATGGGATCAGGAAGTGGGAATGCTCGAGGAAACTCATTTGGGACTGGAGTGAACTGGGGTTCTTCAGGAGTTTCTGGTCAAGGTGGTTTGAACAATGTGTCACAGAGTAGTGGCAACCTTCGCTATGCAGGTGGCGACAGTAGTTATGATTTGGGCGCTAGAGGGTATGGAGGGAGCGGTGGTAGCAGTATTGGCCCAACGTCATCGTACTCCTCATCAAATGGTGTGTTTGATGGGGCCTTTACTGATTTTCATAATAGTAGTTCAGTTTACGGGGATCCCACTTGGCGACCTTCAAATTCTGAGAGAGATGGCTCTGGTTCCTTTGGTTATGTTCTTGGTACTGCAGCATCAGATGTTTCTGCCAAAGGCTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGAGGAATCATTACATAG 1470 0.4374 MRHLSCLINDKMQSDNGKLFIGGVSWDTNEERLREYFSSYGEVVETVIMKDRTTGRARGFGFVVFADPAVADRVIKEKHNIDGRLVEAKKAVPRDDQNILNRSSSSIQGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLVKTFHELNGKMVEVKRAVPKELSTGPNRSPISGYDYGMGRVNSFLNGFTQGYTPSAVGGYGLRMDGRFSPATSGRSGFAPFGSGYGMSMNFELGLNPEFGGNANFNSNLSYARGLNPYYVGSSNRFGNPIGYDGGNGGNNSFFSSMSRNLWGTGGLNYGTGSANSNNAYMGSGSGNARGNSFGTGVNWGSSGVSGQGGLNNVSQSSGNLRYAGGDSSYDLGARGYGGSGGSSIGPTSSYSSSNGVFDGAFTDFHNSSSVYGDPTWRPSNSERDGSGSFGYVLGTAASDVSAKGSPGYVGGYTVNKRQPNRGIIT 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g2017 489 SUPERFAMILY RNA-binding domain, RBD 9 116 IPR035979 GO:0003676
Lele28g2017 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 93 IPR000504 GO:0003723
Lele28g2017 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 177 IPR000504 GO:0003723
Lele28g2017 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 80 IPR000504 GO:0003723
Lele28g2017 489 CDD RRM2_DAZAP1 115 194 IPR034131 GO:0003723
Lele28g2017 489 FunFam Heterogeneous nuclear ribonucleoprotein 1 16 98 - -
Lele28g2017 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Lele28g2017 489 FunFam Heterogeneous nuclear ribonucleoprotein 1 114 201 - -
Lele28g2017 489 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 12 485 - -
Lele28g2017 489 SMART rrm1_1 118 190 IPR000504 GO:0003723
Lele28g2017 489 SMART rrm1_1 18 89 IPR000504 GO:0003723
Lele28g2017 489 SUPERFAMILY RNA-binding domain, RBD 112 215 IPR035979 GO:0003676
Lele28g2017 489 Gene3D - 114 202 IPR012677 -
Lele28g2017 489 Gene3D - 15 99 IPR012677 -
Lele28g2017 489 CDD RRM1_hnRNPA_hnRNPD_like 19 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g2017 Lele-ChrLele28 23242821 23248666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g2017 19 196 Eukaryotic Initiation Factors Gene Family AT2G36660 31.217 1.25e-14 74.7