Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1999 ATGGCGGATTCGGATAACGACTCGGGTGGGATGAACGGTGGCAACGCAAGCGATCCGTCGGCGAAGGAGCAGGACAGGTTCTTGCCGATAGCGAACGTGAGTAGGATAATGAAAAAGGCGTTGCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATAAGCTTCGTGACGGGGGAGGCGTCGGACAAGTGCCAGAGAGAGAAGAGGAAGACGATCAACGGCGACGATCTGCTGTGGGCCATGACCACTTTGGGCTTCGAGGATTATGTGGAGCCCTTGAAGATTTACCTACAGAAGTATCGGGAGATGGAAGGGGAGAAGACTTCCTTCGGGAAACACGGCGAGAAGGACGGTGGCTCCAGTGGAAGTGGGGTTGTTGGGTTTAATGGCGCGGAGGTTATGTACGGTGGGCTGTCGGTAGGGCATCATCAGGGACAGGTGTACGGTTCTGGTGGGTTTAACCAAGGCAACGGTGGTGGTGGGGGCTCCAATATGAGATCCAGGGATTATAGGATAATGGTAATGAGGTTTTGGAACCTTGAGAGGTAG 579 0.5509 MADSDNDSGGMNGGNASDPSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQKYREMEGEKTSFGKHGEKDGGSSGSGVVGFNGAEVMYGGLSVGHHQGQVYGSGGFNQGNGGGGGSNMRSRDYRIMVMRFWNLER 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1999 192 FunFam Nuclear transcription factor Y subunit B-3 16 136 - -
Lele28g1999 192 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Lele28g1999 192 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Lele28g1999 192 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Lele28g1999 192 MobiDBLite consensus disorder prediction 1 19 - -
Lele28g1999 192 Gene3D Histone, subunit A 15 133 IPR009072 GO:0046982
Lele28g1999 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Lele28g1999 192 MobiDBLite consensus disorder prediction 1 25 - -
Lele28g1999 192 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 125 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele28g1999 192 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele28g1999 192 SUPERFAMILY Histone-fold 24 133 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1999 Lele-ChrLele28 23129831 23130839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1999 1 153 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.215 5.65e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele28g1999 CBFD_NFYB_HMF 1.8e-27 CL0012