Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1976 ATGGGCCTCTCAAGTCTACCATCTCCATCTGAAGGAGTATTGTGTGTGCTTCTGGTTAACACTGCATTTTCCGTATCCTTATTTAAAGGCATTGTTAGAACAATCCTTCACATTATTGGTATCAGTCTTTCATCATCACCCACCACTCCATCATCATCATCATCATCATCACCATCATCATCAGAATCATCCCCTTCTCCAGATATCTCTCAAGACCTGCCCGAGTCATTCCAATTCGACCTATGTTCACCGGAGAATTATATTGAAGAGTTCAGAAGCCGGACACCAACAATCCGGTATGACAGTGTGTGTGGCGGCAAACAACCTGAAGAACTTGACTGCTCTGTATGTCTGAATCAATTTGAACAAGAATCTGAGATAATCTGCTTGTCCTGTGGCCATCTATTCCACAAAGATTGCTTGGAGAAGTGGCTGGCCTACTGGAACATTACATGCCCACTTTGCAGGACTCCATTGTTGCCTGAAGAAGAAGAGGTTTCTTCTTGCATTTGGTGA 516 0.436 MGLSSLPSPSEGVLCVLLVNTAFSVSLFKGIVRTILHIIGISLSSSPTTPSSSSSSSPSSSESSPSPDISQDLPESFQFDLCSPENYIEEFRSRTPTIRYDSVCGGKQPEELDCSVCLNQFEQESEIICLSCGHLFHKDCLEKWLAYWNITCPLCRTPLLPEEEEVSSCIW 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1976 171 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lele28g1976 171 PANTHER - 1 169 IPR044249 -
Lele28g1976 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 165 IPR013083 -
Lele28g1976 171 MobiDBLite consensus disorder prediction 44 74 - -
Lele28g1976 171 SUPERFAMILY RING/U-box 104 161 - -
Lele28g1976 171 Pfam Ring finger domain 113 156 IPR001841 -
Lele28g1976 171 SMART ring_2 114 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1976 Lele-ChrLele28 22987195 22987710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1976 1 171 C3H Transcription Factor Family AT2G04240 58.382 3.91e-58 177
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1930 25 26965790 26966299 Lele28g1976 28 22987195 22987710 hybridization
Lele26g1973 26 23156077 23156571 Lele28g1976 28 22987195 22987710 hybridization