Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1975 ATGGGTTATATATGTGACTTTTGCGGAGACCAGAGGTCCATGGTGTACTGCCGTTCTGATGCTGCATGTTTATGTTTGTCATGTGACAGAAATGTTCATTCTGCTAATGCTCTTTCTAAGCGTCATTCGAGAACCCTTATATGTGAGAGATGTAATTCACAACCTGCTCTTGCACGTTGTTCTGAAGAGAGGATTACACTATGTCAGAACTGTGATTGGATGGGTCATGGTCCAAATACATCTTATTCAACACATAAGAGGCAAACGATCAATTGCTACTCTGGCTGTCCTTCAGCGGAAGAATTTTCTTCAATATGGCCATTTGTCTTGGATATCCCTTCCATGCGTGAAACTACCTGCGAGCAGGAACTAGGTTTGATGACCATTAATGAGAACAGTGACAAAAGTGCTGGTGTTCCTCCAGAAAGTCAGAATGCATCTGGTTCAGCTGAAGTAACTGATTTGCGCTGCTTCGATAAGTCTTGGACCGGAGCCTCTGCAATACCTGAGTCAAGCTCAAAACCTCATATTCTAGACCCATCAACTGGGCCTACCAATGAAGGTTTGCCCAAGTTATACTGTCCAAGTACAAAAGGTCCTGTGCCATATGAAAATGAAGATGATGACCTGTATGGTGATTTTGACATGGATGAAGTGGATATGAATCTTGAGAACTATGAGGAACTTTTTGGCATGACTCTTACTCATTCTGAAGAACTCTTTGAAAACGGTGGAATCGGTAGCTTGTTTGGGACAAAGGATGTGTCTGCTGCTGATTCCAATTGTCAGGGATCTATTGCTGCTGAGGGCTCACCGGTCAGACTGGTCAATGCGGTGCAACCAGCGTACAGCAATGCAGTATCTGCAGATTCGATTATGAGCACTAAAACTGAACCGATTCTTTGTTTCACGGGGAAGCAAGCACAATCGAATCTTTCTTTTTCAGGGGTCACGGGAGATAGTAATGCTGGAGATTATCAAGACTGTGGTGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCTTGGTGTCCTCCTTGTCCTGAGAATTCAATACAATCCGCCAACCGCAGCAACGCTGTCATGCGTTATAAGGAAAAGAAGAAGGCACGCAAGTTTGATAAAAAAGTGAGGTATGCCTCTCGCAAGGCAAGAGCCGATGTCCGAAGGCGCGTGAAGGGCCGGTTTGTCAAAGCTGGGGAAGCTTATGATTATGATCCTTTGAGCCCAACCAGAAGCTACTGA 1242 0.4485 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLICERCNSQPALARCSEERITLCQNCDWMGHGPNTSYSTHKRQTINCYSGCPSAEEFSSIWPFVLDIPSMRETTCEQELGLMTINENSDKSAGVPPESQNASGSAEVTDLRCFDKSWTGASAIPESSSKPHILDPSTGPTNEGLPKLYCPSTKGPVPYENEDDDLYGDFDMDEVDMNLENYEELFGMTLTHSEELFENGGIGSLFGTKDVSAADSNCQGSIAAEGSPVRLVNAVQPAYSNAVSADSIMSTKTEPILCFTGKQAQSNLSFSGVTGDSNAGDYQDCGASSMLLMGEPPWCPPCPENSIQSANRSNAVMRYKEKKKARKFDKKVRYASRKARADVRRRVKGRFVKAGEAYDYDPLSPTRSY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1975 413 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Lele28g1975 413 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515
Lele28g1975 413 MobiDBLite consensus disorder prediction 167 200 - -
Lele28g1975 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 401 - -
Lele28g1975 413 CDD Bbox1_BBX-like 47 90 - -
Lele28g1975 413 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele28g1975 413 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lele28g1975 413 SMART bboxneu5 48 90 IPR000315 GO:0008270
Lele28g1975 413 CDD Bbox1_BBX-like 4 47 - -
Lele28g1975 413 Pfam CCT motif 356 398 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1975 Lele-ChrLele28 22977565 22981411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1975 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 57.820 3.08e-159 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele28g1975 CCT 4.9e-16 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1929 25 26956797 26960667 Lele28g1975 28 22977565 22981411 hybridization
Lele26g1972 26 23145250 23150679 Lele28g1975 28 22977565 22981411 hybridization