Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1974 ATGGCAACTCCACCCCTAGTTTTAACATGCAAAGGTGCGGTGTGGTGGGGCGGCGGAGACAACGATGTGACGGTGGAGGAGATACAAGTGGATCCTCCGAAAGCGACCGAAGTTCGAGTCAAGATGCTGTGTGCCAGCGTCTGCCACACCGATATCCTTGGGGCCAAGGACGTCCGATCTGTTGTTGAGAGCAGTGGGGAGAGAGTAAGAGATCTGAAAGTAGGAGATGTTGTGATTCCTACATATATTGGTGAATGTCAAGAATTTAATCCCAACATTGACCTCGCCCATGCTAGTTTCATCTCTTGTTGGTTTTCTACTGGTTTTGGGGCTGTCTGGAAGGAAGCCAAGGTCGAGAATGGATCATCTGTGGCTGTTTTCCGCCTTGGTGGTGTTGGATTAGGGCATGTCTCTGCAATGAAATTGCAGGCTATAAGCTCAGCCAAGATGATGGGGGCAACAAAAATAATTGGGATTGATACAAATGAAATGAAGAAAGCAAAGGGAGAAGCTTTTGGAATGACAGATTTCATCAATCCTGATGCCTCTGAGAAATCAGTTTCAGAGTTGGTCAAGGAAGTGAGCGATGGAATGGGTGTAGATTTTTCTTTTGAGTGCACTGGAGTTGCCCCTTTACTTAATCAGGCATTTCAAGCCACAAAATTGGAGTTTCCTCTGGATGAACTTCTTACTCATGAAGTGTCACTAGGAGAGATAGTGACTATGGCCTCAACGCCACAAGTAATTACATGCAAAGGGGCGGTATGGTGGGGAGGCGGCGAAAACGATGTGAAGGTGGAAGACGTACAAGTGGATCCTCCCAAACCAACCGAAGTTCGCGTCAAGATGCTCTGTGCCAGTATCTGCCACACCGACCTCCTTAGGGCCGCAGGATTTCCACTCCCTTTGTTTCCTCGAGTATTAGGGCATGAAGGTGTTGGTGTTGTTGAGAGCATTGGGGAGAAAGTAACAGATCTAGAAGTAGGTGACGTTGTGATCCCAACATTTATTGGTGAATGTCAAGAATGTGCGAACTGCATTTCAAGGGAATCCAACTTTTGCCTGAAATACCCTTACACAATAAGCGGCCTAATGCTGGATAACTCATCAAGGATGTCCATAAGAGGTCAAAAGATATTCCATCTCTTTAGTTGTTCTACATTTGCAGAGTACATGGTAACTGAAGCTAATTACCTCGTCAAGGTTGATCCCAACATTGACCCAGCCCATGCTAGCTTCATGTCATGTGGGTTCTCAACTGGTTTCGGTGCTGTTTGGAAGGAAGCCAAGGTTGAAAGTGGATCATCCGTGGCTGTTTTTGGCCTTGGTGGTGTTGGTTTAGGGGCTATAAGCGCAGCCAAGATGATGGGGGCGGCCAAGATAATTGGGATTGACAAAAATGAAATGAAGGTGGAGAAAGGAAAAGCTTTTGGAATGACAGATTTTATCAATCCTGATCCATCTGATAAATCAACTTCAGAGTTGGTCAAGGAATTGAGTGGCGGAATGGGTGTGGATTATTCCTTTGAGTGCACTGGAGTTGCCCCTTGTCTTACTCAGGCCCTGCAAGCTACAAAATTGGGGAAAGGAAAGACAATAGTAATTGGTTCAGTAACTGAAGAATTTGTGCACATCAACTATCGTTCTCTTTTATTAGGGCGAACTTTAAAAGGCTCCGGTTTTGGAGGACTAAAACCCAAATCTGACCTGCCTTTCATAGTTGACAAATGCCTGAAAAAGGAGTTCCCTCTTGATGAACTTTTAACTCATGAGGTGCCATTGAAAGATATAGACAAAGCTTTGGAGCTATTAAAACAACCAGATTGTGTCAAAGTTGTCATTAGGATGTGA 1851 0.4506 MATPPLVLTCKGAVWWGGGDNDVTVEEIQVDPPKATEVRVKMLCASVCHTDILGAKDVRSVVESSGERVRDLKVGDVVIPTYIGECQEFNPNIDLAHASFISCWFSTGFGAVWKEAKVENGSSVAVFRLGGVGLGHVSAMKLQAISSAKMMGATKIIGIDTNEMKKAKGEAFGMTDFINPDASEKSVSELVKEVSDGMGVDFSFECTGVAPLLNQAFQATKLEFPLDELLTHEVSLGEIVTMASTPQVITCKGAVWWGGGENDVKVEDVQVDPPKPTEVRVKMLCASICHTDLLRAAGFPLPLFPRVLGHEGVGVVESIGEKVTDLEVGDVVIPTFIGECQECANCISRESNFCLKYPYTISGLMLDNSSRMSIRGQKIFHLFSCSTFAEYMVTEANYLVKVDPNIDPAHASFMSCGFSTGFGAVWKEAKVESGSSVAVFGLGGVGLGAISAAKMMGAAKIIGIDKNEMKVEKGKAFGMTDFINPDPSDKSTSELVKELSGGMGVDYSFECTGVAPCLTQALQATKLGKGKTIVIGSVTEEFVHINYRSLLLGRTLKGSGFGGLKPKSDLPFIVDKCLKKEFPLDELLTHEVPLKDIDKALELLKQPDCVKVVIRM 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1974 616 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 406 579 IPR036291 -
Lele28g1974 616 Gene3D - 5 91 - -
Lele28g1974 616 SUPERFAMILY GroES-like 567 615 IPR011032 -
Lele28g1974 616 SMART PKS_ER_names_mod 260 614 IPR020843 GO:0016491
Lele28g1974 616 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 309 323 IPR002328 GO:0008270|GO:0016491
Lele28g1974 616 Gene3D - 421 559 - -
Lele28g1974 616 CDD liver_alcohol_DH_like 249 615 - -
Lele28g1974 616 FunFam Alcohol dehydrogenase 6 254 434 - -
Lele28g1974 616 Pfam Alcohol dehydrogenase GroES-like domain 277 402 IPR013154 -
Lele28g1974 616 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 93 222 IPR036291 -
Lele28g1974 616 FunFam S-(hydroxymethyl)glutathione dehydrogenase 108 225 - -
Lele28g1974 616 SUPERFAMILY GroES-like 6 127 IPR011032 -
Lele28g1974 616 Pfam Zinc-binding dehydrogenase 144 221 IPR013149 -
Lele28g1974 616 Pfam Zinc-binding dehydrogenase 444 563 IPR013149 -
Lele28g1974 616 Gene3D - 255 611 - -
Lele28g1974 616 Gene3D - 108 248 - -
Lele28g1974 616 PANTHER ALCOHOL DEHYDROGENASE 7 88 - -
Lele28g1974 616 SUPERFAMILY GroES-like 246 440 IPR011032 -
Lele28g1974 616 FunFam S-(hydroxymethyl)glutathione dehydrogenase 421 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1974 Lele-ChrLele28 22962526 22970348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1974 277 608 Monolignol Biosynthesis Gene Families AT2G21730 25.000 5.75e-13 68.9