Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1967 ATGTGTCAGAAACAATGTCGAGATGAGAATGGCTTCAAATGTCATTGCATGAGTCAAAGTCACCAGCGTCAAATGCAAATCTTTGGACAAAACCCAAATCGGATTGTTGAGGGCTACTCTGATGAGTTTGAGAACACCTCTCTTGAGCACATGAAGCGCAGCCACCGATTCAGTCGGACTGGAGAGTGTAAGGTTGAAGAAACACCCAAGGGTTGGTTTATCACCTACATTGATAGAGATTCTGAGACTCTTTTCAAAGAGAGCATGAAGAATAAGAGAATAAAGTCTTACATGGAAGAGGAAGGCAAGAGAAGGAGATACAGAAGAGCAGTCATGACCAAAGCTTTGGCTGATAAAGGGTATTACAAGCAAAAAGGTGTTGTTTTAAAGGTGACTGACAAATGGGTTGGGCAAATAAAAATGCTTGAAAGCGAGCATGTGCTCAGAGTTGATCAGGCCGAGCTTGAAACTGTGATTCCACAAATTGGTGCTCCTGTCAAGATTGTAAATGGAGCGTATCGCGGATCTACGGCAAGATTGTTGGAGGTTGGTATAGATCACTTTTGTGCCAAGGTGCAGATAAAGGAAGGTCCATATGTTGGCAGAATACTCCAGGAGGTGAAATATGAGCACATCTCCAAAATAACCCAAAGAACTCTTTCCGGAGGAAAGGCTGTTACTTCGACAAAGCCCGGGCTTCTTACCGGGAGCGAGGTTCCTCGCCTCAATGAAGACAATGCAGCTGTGCTTAAAGCATCACATGAGAGTAATCATGATAGGGCAGATGTTAGGGAGAATGTTTCAAGAGGAAATATAAATAATGACGTGGATGAAGGGTCCAACAGAAGTTCTCATGATTATTTAGATGATGACGATATGTGTTGGAATTTTTTTGGCGGAAAAAGCTGTTTCTGTTGTAATGAAGGTGGAGAACTGTTAGTTTGCGCTGAGAGAGATTGCCCTATTAGCCTCCATGCAAAATGTTTATGCATTGAACCTAAATTTGATGATAAGGGGAACTTCTACTGTCCCTATTGCTGGTACAAACGAGCATGGGCAGAGGCTCAGGAATCCAGGGAAAAGGCCTTTTTAGCAAAGAAAGATTTGTCTAAATTCTTCTTTCAGAATGGAATCACGAGCAGCAAACTCATGGGGAATGATGTGGGAGTTAAGACAAGAGAGCCCAAAGGTGTCTCTGTTATGGGAAATGGGAGTGGTCTGGAGTATCATAATAATAGGCCAGGCAATAAGGGTGTTTTGGATATAGCCAATGCAAACTGTCCACAAGTTAATACTGATGTTTCTAGTAGCAGGAAGGAATATGATATTCTTAATAATTACATTTCCAGAACACATGAAACCAGAATTGTTGAAGGACAAGATAGAATTAAACTGGAAGATTTAAGTTATAATAATGAACATGTTCATGTAATGACTGTTGAGCATGTAAAACCTTTGAGTTCTTTCCGTTTTGGTGAATCCACAGATGGAAACTTGCATGATTATGAATTTGCCAATGGGATGCAAGGTGGTCTTGAAGTATATGTAGATAAGAGCAGGGTGAAAGATAGAGAAAAGATAGTCCAGAACGAATTAAATCTATGTGCAACTGATTGTTCTGTTAGTGGAACTGGTGATTCAGATTCTGAGCCTCTGCCCATGAAGGAGAGTTGTGTAAAACAAGAAGGGGGGCAAAGGACATCATTGCAGCGGAAGAGTAGAACTGGGAGTAAAAAATGGTTCAACAATCTGACTTTAGAAACTGGAAAGCGCAAGAGATTAAGTTGGACTGTTGAAGAAGTAAATATGCTGCAGTTCATAGCATCAACTTTGGTTCTTACCCTGCAGGAAGGAGTGTTCAGGTTCGGAATGGGCCAGCCGCATATACCTTGGAAGAAAATTTTAGAATATGGTTCTCATGTATTCCATAACAAGCGTAACACTCATGATCTGAAAGATAAATGGAAACATTTGAAGTTTTGA 1983 0.4095 MCQKQCRDENGFKCHCMSQSHQRQMQIFGQNPNRIVEGYSDEFENTSLEHMKRSHRFSRTGECKVEETPKGWFITYIDRDSETLFKESMKNKRIKSYMEEEGKRRRYRRAVMTKALADKGYYKQKGVVLKVTDKWVGQIKMLESEHVLRVDQAELETVIPQIGAPVKIVNGAYRGSTARLLEVGIDHFCAKVQIKEGPYVGRILQEVKYEHISKITQRTLSGGKAVTSTKPGLLTGSEVPRLNEDNAAVLKASHESNHDRADVRENVSRGNINNDVDEGSNRSSHDYLDDDDMCWNFFGGKSCFCCNEGGELLVCAERDCPISLHAKCLCIEPKFDDKGNFYCPYCWYKRAWAEAQESREKAFLAKKDLSKFFFQNGITSSKLMGNDVGVKTREPKGVSVMGNGSGLEYHNNRPGNKGVLDIANANCPQVNTDVSSSRKEYDILNNYISRTHETRIVEGQDRIKLEDLSYNNEHVHVMTVEHVKPLSSFRFGESTDGNLHDYEFANGMQGGLEVYVDKSRVKDREKIVQNELNLCATDCSVSGTGDSDSEPLPMKESCVKQEGGQRTSLQRKSRTGSKKWFNNLTLETGKRKRLSWTVEEVNMLQFIASTLVLTLQEGVFRFGMGQPHIPWKKILEYGSHVFHNKRNTHDLKDKWKHLKF 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1967 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 382 IPR013083 -
Lele28g1967 660 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 59 IPR037321 -
Lele28g1967 660 Pfam KN17 SH3-like C-terminal domain 111 151 IPR041330 -
Lele28g1967 660 Gene3D - 56 95 IPR038254 -
Lele28g1967 660 Gene3D - 160 216 IPR014722 -
Lele28g1967 660 SMART Kin17_mid_2 23 113 IPR019447 -
Lele28g1967 660 MobiDBLite consensus disorder prediction 253 283 - -
Lele28g1967 660 Gene3D - 586 659 - -
Lele28g1967 660 CDD KOW_KIN17 162 215 IPR041995 -
Lele28g1967 660 ProSitePatterns Zinc finger PHD-type signature. 303 346 IPR019786 -
Lele28g1967 660 CDD SANT_TRF 596 659 - -
Lele28g1967 660 FunFam DNA/RNA-binding protein KIN17, putative 160 216 - -
Lele28g1967 660 Pfam Domain of Kin17 curved DNA-binding protein 58 106 IPR019447 -
Lele28g1967 660 Gene3D - 110 159 - -
Lele28g1967 660 SUPERFAMILY FYVE/PHD zinc finger 301 351 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1967 Lele-ChrLele28 22914627 22920234 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1967 111 216 C2H2 Transcription Factor Family AT1G55460 68.868 7.88e-41 152