Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1965 ATGAACATTAACTCCCTCGAAGCCCTAAAATGCCCTGGACGCTATACCGCGCTCGAGGCTGAAGTAATCGAATTTGGTGTTGAAGTTGGCGCACAACTCACCCTCTTCACTCAACTATGGTCAGTTTCATCGTTAAATCGAAGTGGCGGAAGGGACCGGTTTAGAAGGGATTACCCTTCTAGATTTGAAGATAAAGTCAACAGTGGGCGTAGCAACAGTAACAACCCCTCTTCCAGGCACATTTGGGTTGGGAATCTAGCACACAGTTTAACAGAGAATGAACTTGCTCGTCATTTTCTACAATTTGGACCACTTGAAAGTGTTGCATTCCAGCCTGGTCGTAGCTATGCTTTCATCAATTTCAAAAGGGATGAAGATGCTATTGATGCTTTGAACGAACTCCAAGGTTTTCCTGTTGCAGGCAACCCGCTTAGAGTTGAATTTGCGAAGGCGGATAAGCCATCGTCACTAACACGTGATGAAGACTACTCTTGGGATGAAAGAAGCTCAGGGAGAAGAGGATCTCCTTTCACTCAAAGAGAGTTTAGAGGACGCCATGGTAGTCCTGAGCCTCCATATTCCGACAAATCCAAGCTGACTGATAAAAACCCTGAACCCAGTGAGGTATTGTGGATAGGATTTCCATCTCAATTGAATGTGGATGAGCTAGCTTTGAGAAGGGCTTTTTCTCCATTTGGTGAGATTGAGAAGATTACAACATTTCCGGGTCGTAGTTATGCTTTCGTTCGTTTTAGGAGTCTAACATCAGCACGCAGAGCAAGAGATTCTTTGCAGGGAAAGTTATTTGGAAATCCACGTGTACATATTTGTTTTGCAAAGAGTGAAGCTGGTTCATCAAGCAGTGGGAGGTTTTCAATTAATACCCCTTCCTCCCCATTTTACTCATCAAGCGGTCGTCATGGATCGACTGAGAACTTGAGACAAGATAGGAGTATTGCAGGCTTCAGTGGAGACCGTAGAGCTAGCTCCCCTAATATATTCCCAAGATGGGACTTGGCAGATTCTGATACTTATGATTTAGATAGAAGGGGTTCTTCACGGTCTAGTGGAGTCAGTTCATATGAACAAAGGAGAGTTGGTGAAAAGTTGCCACCACTTGGAGTACTACAAGACAGTTTTGAACACTCAATAAGCCCTTCTAGAGATAGACAAGCTCATCTAGGTACTTTTCCTCAGAGATATGCTCAAAAACATGCATTATTTGAAGATCCACGGGACTTTCCAGATGATTTATATTATCATGACACTAAAAAACTGAAGACTGGATCTCTTCCTCCTGAAAAGGAGCTTCCGGAGTATCCTCTTTCAGATTTAGAAAGGCAGAGACGTACCCTCCCCAGGTTATTGACTGATTTTCCCCAACATGAGGTCCTTGATAAAAGAATTGATGCTGGACCTGTTGTGCATAGACAAACTTCTGATCCCAGACCAAATTCCCCTTTTGCTCGGTCAGATAGGAGTGAGCGCTTGAAGCCTAGTGATAATTTCCACGTGGGTCTCAGTGCTCTGCAATCGTATCCTATTGAGAAGAGAAGACTCACACCTGAACCTAGCAACTCATCTTTAACAGAGTGGAAATGGGAAGGAACCATTGCCAAAGGTGGAACACCTGTTTGTCGTGCTCGCTGCTTCCCTGTGGGAAAAGTTCTGGATATCATGTTACCTGAATTCTTGGATTGCACAGCGAGGACTGGTCTAGACATGCTTTCAGAGCATTATTACCAAGCGGCTGGTGCTTGGGTTGTTTTCTTTGTGCCTGAAAGCGATGTTGACATCGAATACTACAATGAATTCATGCATTACCTGGAGGAAAAGGGCAGGGCTGCGGTTGCTAAGATAGATGACAGGAATACCTTGTTCCTTGTACCTCCATCAGATTTCTCGGAGAAAGTATTGAAAGTACCTGGAAAGTTGAGCATATCTGGTGTGGTTCTAAGGTTGGAGCACCCTGGTTCAACTCAAGGGTACATGCACAATCAAAATGAAGCAAAAGATGGAAGGTTGTCATCATATCATGCCGATACATTGTATCGAATGCCACGGATGTCATCAGATAGTAGTCCCCCACCATTTACATCCTTGCCATCGTCCCTGTCTACTGCAGTTTCTGGTTCAGCTCATGCCACAGGTGGCCCATCTGGTTCTCATGATGGAAGAAGGGGACACGATTATCCAGTTCAACAGCAGAACCATACATCTGGGCCAAATTGGTCTGCTAACAATCTTCAGACCCTGATCTCCAATAGAAATTTACCATTACAACTATCAAATGGTGCTGTTGAACCTCTTACTCAGGATCATCAGCTTAGTATTCAGAAGCCACTGGATTCTATATCTCTGCCTGGGGGATCCCTGCAACAAGAGCAGCTCTCACAACTTGCAGCGTCTCTTCTCGAGCAGCAGAGGCAATCAGGAAGCGCTCTGAGTGTATCCATGTCAGATGATCCGAGGCAAACTCATAGAGTTAACGGGTCTGACACTTCCTCGAGACCATCCCAAAAATACGCGATTCAAAATAACTCCATGAATCCTGAACTTGCAACATCTCAGTATGAACGAGTCATACAACTTCAAAAGCAACAGCAGATGTCAAACGCGCCTCACGGATCACAGATGGTTGAAAGAGAGACACAGAGAGCGGCCAACGGAAATCAGCAACTGCTAACCGGTAGTAACTTACAGCAAGATACAGAAGCAGATCCACAGAAGCGTCTACAAGCGACGTTACAGTTGGCCGCAGTTCTTCTTCAGCAAATTCAGCAAGGAAAAGGAAGTTGA 2799 0.4484 MNINSLEALKCPGRYTALEAEVIEFGVEVGAQLTLFTQLWSVSSLNRSGGRDRFRRDYPSRFEDKVNSGRSNSNNPSSRHIWVGNLAHSLTENELARHFLQFGPLESVAFQPGRSYAFINFKRDEDAIDALNELQGFPVAGNPLRVEFAKADKPSSLTRDEDYSWDERSSGRRGSPFTQREFRGRHGSPEPPYSDKSKLTDKNPEPSEVLWIGFPSQLNVDELALRRAFSPFGEIEKITTFPGRSYAFVRFRSLTSARRARDSLQGKLFGNPRVHICFAKSEAGSSSSGRFSINTPSSPFYSSSGRHGSTENLRQDRSIAGFSGDRRASSPNIFPRWDLADSDTYDLDRRGSSRSSGVSSYEQRRVGEKLPPLGVLQDSFEHSISPSRDRQAHLGTFPQRYAQKHALFEDPRDFPDDLYYHDTKKLKTGSLPPEKELPEYPLSDLERQRRTLPRLLTDFPQHEVLDKRIDAGPVVHRQTSDPRPNSPFARSDRSERLKPSDNFHVGLSALQSYPIEKRRLTPEPSNSSLTEWKWEGTIAKGGTPVCRARCFPVGKVLDIMLPEFLDCTARTGLDMLSEHYYQAAGAWVVFFVPESDVDIEYYNEFMHYLEEKGRAAVAKIDDRNTLFLVPPSDFSEKVLKVPGKLSISGVVLRLEHPGSTQGYMHNQNEAKDGRLSSYHADTLYRMPRMSSDSSPPPFTSLPSSLSTAVSGSAHATGGPSGSHDGRRGHDYPVQQQNHTSGPNWSANNLQTLISNRNLPLQLSNGAVEPLTQDHQLSIQKPLDSISLPGGSLQQEQLSQLAASLLEQQRQSGSALSVSMSDDPRQTHRVNGSDTSSRPSQKYAIQNNSMNPELATSQYERVIQLQKQQQMSNAPHGSQMVERETQRAANGNQQLLTGSNLQQDTEADPQKRLQATLQLAAVLLQQIQQGKGS 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1965 932 SMART rrm1_1 209 277 IPR000504 GO:0003723
Lele28g1965 932 SMART rrm1_1 80 147 IPR000504 GO:0003723
Lele28g1965 932 Gene3D - 61 157 IPR012677 -
Lele28g1965 932 PANTHER RNA RECOGNITION MOTIF-CONTAINING 75 926 - -
Lele28g1965 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 144 IPR000504 GO:0003723
Lele28g1965 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 273 IPR000504 GO:0003723
Lele28g1965 932 MobiDBLite consensus disorder prediction 345 373 - -
Lele28g1965 932 MobiDBLite consensus disorder prediction 687 717 - -
Lele28g1965 932 CDD RRM3_Spen 81 150 - -
Lele28g1965 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 281 IPR000504 GO:0003723
Lele28g1965 932 FunFam RNA recognition motif (RRM)-containing protein 194 287 - -
Lele28g1965 932 MobiDBLite consensus disorder prediction 686 747 - -
Lele28g1965 932 MobiDBLite consensus disorder prediction 865 909 - -
Lele28g1965 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 151 IPR000504 GO:0003723
Lele28g1965 932 MobiDBLite consensus disorder prediction 471 500 - -
Lele28g1965 932 MobiDBLite consensus disorder prediction 811 840 - -
Lele28g1965 932 SUPERFAMILY RNA-binding domain, RBD 68 156 IPR035979 GO:0003676
Lele28g1965 932 MobiDBLite consensus disorder prediction 732 747 - -
Lele28g1965 932 MobiDBLite consensus disorder prediction 152 169 - -
Lele28g1965 932 MobiDBLite consensus disorder prediction 151 202 - -
Lele28g1965 932 Gene3D - 194 288 IPR012677 -
Lele28g1965 932 SUPERFAMILY RNA-binding domain, RBD 198 282 IPR035979 GO:0003676
Lele28g1965 932 MobiDBLite consensus disorder prediction 178 202 - -
Lele28g1965 932 Pfam SPOC domain 527 642 IPR012921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1965 Lele-ChrLele28 22900381 22908942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1965 71 280 Eukaryotic Initiation Factors Gene Family AT4G34110 23.318 2.38e-06 49.7