Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1959 ATGCCTTCTACCTGCATTGTTCCTTCTGGTCACTCCATCTTCTTTCCCATACCCTTCACTTCTTCCTCCGCATTTCCCTCTTCTCAGAGATTGAAACCTCGAATTCTAACGAAAACTGCGCCTTCTTCTCTGAGATCACCCAGTAGAGGAGGACTAGTTGTAAGAGCCGCTATTTCCATGGAGAAAGAGACGCCTGAATCTGAACGCCCACCAACTTTTCTCAGAGAATCTGATGGTCATGATCACGTCACTTCTTCTTCTTCTTCTTCTGTCAGGGCTCGCTTTGAGAAGATGATAAGGGAGGTTCAGGACAGCGTGTGCGGTGCACTTGAAGCTGCCGATGGCGGAGCCAAGTTTAAGGAGGATGTTTGGTCCAGGCCAGGCGGTGGCGGGGGAATCAGTAGGGTTCTTCAAGACGGAGCCGTTTTTGAGAAGGCTGGGGTTAATGTGTCTGTTGTTTATGGTGTGATGCCGCCTGAGGCTTATCGTGCTGCCAAAGCTGCTCCAGCTGATCAGAAACCCGCTCCGGTTCCTTTCTTTGCGGCTGGAATCAGCTCGGTTTTACACCCAAAGAACCCATTTGCCCCAACAGTGCATTTCAATTATCGGTATTTTGAAACTGATGCTCCCAAAGATGCTCCTGGAGCACCAAGACAATGGTGGTTTGGTGGTGGGACTGACTTGACTCCTTCTTACATTTTTGAGGAGGATGTCAAGCATTTCCATTCGATTCAAAAACGTGCATGTGACAAGTTTGATCCTACATTCTATCCTCGATTCAAGAAATGGTGTGATGATTACTTCTATATCAAGCATCGGAATGAGAGGAGAGGGCTTGGAGGAATATTTTTTGATGATCTAAATGACTATGATCAGGAGATGCTACTCTCCTTTGCGACCGAATGTGCCAATTCTGTGATCCCTGCTTACATACCCATAGTAGAGAAAAGGAAGGATACGGCTTTTGCAGATCAGCACAAAGCATGGCAACAATTGCGGAGGGGACGATATGTTGAGTTCAATTTGGTTTATGATCGGGGCACAACATTTGGACTAAAAACAGGAGGGAGGATAGAGAGTATTCTTGTTTCTCTTCCACTAACTGCTCGGTGGGAATATGATCATAAACCGGAGGAAGGAAGTGAGGAATGGAAGCTCTTAGATGCTTGCATCAACCCCAAGGAATGGATCTAG 1194 0.4673 MPSTCIVPSGHSIFFPIPFTSSSAFPSSQRLKPRILTKTAPSSLRSPSRGGLVVRAAISMEKETPESERPPTFLRESDGHDHVTSSSSSSVRARFEKMIREVQDSVCGALEAADGGAKFKEDVWSRPGGGGGISRVLQDGAVFEKAGVNVSVVYGVMPPEAYRAAKAAPADQKPAPVPFFAAGISSVLHPKNPFAPTVHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPSYIFEEDVKHFHSIQKRACDKFDPTFYPRFKKWCDDYFYIKHRNERRGLGGIFFDDLNDYDQEMLLSFATECANSVIPAYIPIVEKRKDTAFADQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACINPKEWI 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1959 397 PIRSF Coproporphyri_ox 51 397 IPR001260 GO:0004109|GO:0006779
Lele28g1959 397 PRINTS Coprogen oxidase signature 134 155 IPR001260 GO:0004109|GO:0006779
Lele28g1959 397 PRINTS Coprogen oxidase signature 220 242 IPR001260 GO:0004109|GO:0006779
Lele28g1959 397 PRINTS Coprogen oxidase signature 257 286 IPR001260 GO:0004109|GO:0006779
Lele28g1959 397 PRINTS Coprogen oxidase signature 181 205 IPR001260 GO:0004109|GO:0006779
Lele28g1959 397 PRINTS Coprogen oxidase signature 329 356 IPR001260 GO:0004109|GO:0006779
Lele28g1959 397 PRINTS Coprogen oxidase signature 357 383 IPR001260 GO:0004109|GO:0006779
Lele28g1959 397 PRINTS Coprogen oxidase signature 117 133 IPR001260 GO:0004109|GO:0006779
Lele28g1959 397 Gene3D Coproporphyrinogen III oxidase, aerobic 54 397 IPR036406 GO:0004109|GO:0006779
Lele28g1959 397 FunFam oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic 55 397 - -
Lele28g1959 397 PANTHER COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL 57 397 IPR001260 GO:0004109|GO:0006779
Lele28g1959 397 MobiDBLite consensus disorder prediction 61 82 - -
Lele28g1959 397 MobiDBLite consensus disorder prediction 60 89 - -
Lele28g1959 397 ProSitePatterns Coproporphyrinogen III oxidase signature. 261 285 IPR018375 GO:0004109|GO:0006779
Lele28g1959 397 Pfam Coproporphyrinogen III oxidase 95 396 IPR001260 GO:0004109|GO:0006779
Lele28g1959 397 SUPERFAMILY Coproporphyrinogen III oxidase 88 397 IPR036406 GO:0004109|GO:0006779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1959 Lele-ChrLele28 22865364 22869092 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1914 25 26829989 26841237 Lele28g1959 28 22865364 22869092 hybridization
Lele26g1956 26 23036275 23039891 Lele28g1959 28 22865364 22869092 hybridization