Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1941 ATGGGTCAATTCTCTACTTTGCAGTGTATTGTTAATACGTTAAATTGTTTTCTTTCCCCCAAAATGGAAGCTGAGAATTCTGATGTGTCGAAGGCGGAAGAATTCAAACTCCTTGCAAACGAAGCATTCAATGCTCGCAAATATGGCCAAGCTATTGATTTATATACACAAGCAATTGAACTGAACAGTCGAAATGCTGTTTACTGGGCCAACCGGGCCTTTGCACATCTTAGGCTTGAGGAATATGGTAGTGCAATACAAGATGCTTCGAAGGCCATTGAAGTTGATCCTAAATATTCAAAGGGTTATTACAGACGAGGTGCTTCTCATCTTGCCATGGGGAAATTCAAGGAAGCGCTGAAGGATTTTCAGCAGGTCAAGAAAATGTGCCCAAATGATCCCGACGCAACAAAGAAATTAAAGGAATGTGAAAAGGCAGTTATGAAACTTAAATTTGAAGAAGCAATTTCTGCACCATATACTGAAAGGCATTCAGTAGCCGAATCCTTAGATTTCCGTACCATAGGAAAGGGTCACAATTCTTTGATGCCCACCGAATTGGCCATAGCAGCAGTGACAGTGGCAGTTATGGCAGCAGGTGTGATGTTGTTCAGGACATCAGTGGCCACAATGGTAGCTGCAGTTGTGGTTGGTCTGCTGTTGCTCCTTGGGGCATATTGGTGGAGTAGCTACAATGCTGGTATAATTAGCAGGAGTGATTTACATGACCTAGATGTGGAGCCACAATACTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAAAAAATGATGGATGATTTTAAGAATCAAAAGTGCCTACATAAAAGGTATGCCTACCAAATTGTATTGCAAACAAGAGAGATGTTGTTATCCTTGCCTCCTCTTGTTGATATAAATGTTCCTGATGGCAAACATTTCACTGTTTGCGGTGATGTGCATGGTCAGTACTACGACCTCTTAAATATCTTTGAGCTTAATGGGCTTCCCTCAGAAGAGAATCCATACCTTTTTAATGGTGACTTTGTGGATAGAGGATCTTTTTCACTAGAAGTCATCCTTACTTTGTTTGCATTCAAGTGCATTTCTCCATCAGCCATATATCTAGCTAGAGGGAATCATGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGCGAGGTCCACTCGAAGTTAAGCGACACATTTGTGGAACTATTTGCAGAAGTCTTCTGCTGTTTACCTTTGGCTCATGTGATAAACGGGAAAGTTTTTGTTGTTCATGGAGGTCTTTTTAGTGTTGATGGAGTCAAACTCTCTGACATTAGAGCAATTAACCGATTTTGTGAGCCCCCGGAAGAAGGATTGATGTGTGAATTGCTATGGAGTGATCCACAACCTCTTCCTGGACGGGGCCCAAGCAAGCGTGGTGTAGGTCTTTCTTTTGGTCCAGATGTGACAAAAAGCTTTTTGCAGGAAAATAATTTAGAGTTAGTTGTCAGATCTCATGAAGTAAAGGATGAGGGTTATGAGATTGAACATGATGGTAAACTCATAACTGTATTCTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGCGCATTTATTCGATTCGAAGCACCTGATATGAAGCCAAACATTGTGACGTACTCAGCAGTGCCACACCCGGATGTGAAGCCAATGGCTTATGCAAACAACTTTCTTCGGATGTCGTTTTCTGTTGCTTCCTCTTCTAACTTGAATGGGGCCAAAATCGCTCCTTTTGTAATATCAACTGCATTGACTTCGAAACAGGCCAAGCCCCAGTTTGAAGGTTGTCGAATTGGATTACTTTTAGGGTTTTTGGTTGGTTTAATAAATGATTGTGCAATGCATTTTAAATGCCATAATGTTATTGTTTCCTTAGAGCTGATTGAGGAAACCTTCTGGTTACGTGTGATGGACGTAGAAGTGGTGGACCTTTATGCGACTAATCCAGGACCAATTGATGGTTCAATTTTATACGATCAAGATAAGCATGTATCTACGGCAGTTTGGGAAGGACAGGAGCGTGGTGCTCTCAGATGCCATGAACACACTTCAAAGCTTGATCAATGGACACTTACTCCTAAGCAGATTGAGTTGGTACACAAGGCTGGTTTTGGGTACTTAAGATCGATTCCGGCCATTAGTCTCGACAATCCTCTTATCTCTGCCCTGGTTGAAAGGTGGAGAAGAGAAACAAATACTTTCCACTTAAATGTTGGAGAAATGACGGTAACCCTCAAAGATGTCGCTCTCTTACTAGGTCTGGCTATAGATGGGGACCCTGTAATAGGTATAACATATACTGCATGCAGTTCAGTCTGTGAAAAGTACCTTGGCAAAGCACCAGAATCTGGTTATACAAGTGGTGGAATGGTGAAGCTGAGTTGGTTGAAAGAGTTCTTTTCTCACTGTCCTGAAAATGCTTCAATGGAAGTGATAGAGCAACATACTCGTGCCTATCTTCTTTATCTTGTAGGTAGCACCATATTTTCCACCACCACTGGGAACAAAGTCCCTGTAATGTACTTGCCATTATTTGGGAATTTTGAGCAATGTGGACGATATGCCTGGGGTGCAGCAGCATTAGCATTTTTATATAGAGCTCTGGGAAATGCCTCTCTGAAAACTCAAAGTACTATTAGTGGCTGTTTAACACTACTGCAGTGCTGGAGTTACTTTTACCTGAATATTGGTCGGCCAAAGCTTAACCATGATCCTATGCGTGATCAATTTCCATTTGTGCTAAGATGGAAAGGAAAGCAAAGTGGTCCAACAGCAAATCGTGATGTAATTTTCTACCGGAAGGCTTTGGATTCCCTAAAACCAATTGATGTGGAGTGGCTGCCGTATAGAAGCATAGACAGTACGGTAATTCCAGAAGATATCAAAAGTACTTTAATTCTTGGGAGGTCGAAGACGATGTTGATATGCTTTGACAAGGCAGAGAGACATCTTCCGAATCGATGTCTAAGGCAATATGGCATGCTTCAATCAATTCCGGAGCATGTGGAGCACTGGGAGAGGAAGAGTCGAGGAGTGGACGGTGGTGTCAATTTGTCAGGGAAAATGGAATCGGAGCTTACTGAATGGATGGACCGGCATCTCCATATCGTTGATGGTTACGAGGAGGTAGACAAAAATGAGTACATACAGTGGTATCTGAAAATTACTCGCAGATTTGTGGGAAGACCTATTTCTCTCTCATCTGAGTTTCAAAGAACAAATGCCGGTCTGAGGGATATCGCGCATATAGCAGACACTTTTGCAACTGATGGGCTGGATGCAGATCAAATTGAATCAATTGCTAGGATAAGATTAATTGCACATGAATGTTTGAGAGACCAATTTGGTGGTCAAGCCATAGTGCCAGCTACCCCACAAGTTGAGCTTGGAAAGAGGGTGCGAGGAAAGGAGAGGGTTAGAAGAAGAGGTTCTGGCAAACGATTGCGGAGGGATGACGACGACGCAGTTCAGTATAATGCAGCTAGTGAGGATGAGCAACCTCAGTTCTATGGTGCTGCTATGAAGATCGAGGAATTACAACTAAGTCATGTTGACAGAGAGGCGGCAGATCAAGCACAAATCTACGCTTTAGATAACGAGGTCGATTCTGTCCTGTTAATTCATGCAGATTGTGATAGTGGTGGTGAGAATCTGCAGCTGTGTGATGCAAACTTTGAGCTGGATCAATCAGCTTTAGGCCCTGCAGCTGGTGAAGAAAATAATGAGGAGCCAAAGCATATAGCTCCCGAGGTTAACAATGAAGAACCAAAGCATTTAGCTTCTGAGGATAACAATGAAGAAGTAAGCCATATAGCTGATGAGGTTAACAATGAAGAACTGAAGCATGCAGCTGATGCAGTTATAAAGGAAGAACTGAACCAAGCGATTGTCGACGAAAAGGTCGAGGAAATGGATGTTGCTAACAAGGTTTATGATGCACAACCACCTTCTGATGTCTCTCAGGAAGTTGATAATTCACAGCTCTGGGATGCAAGTCTTGAGATCAAGAACTCAACTCACGAGGTCAATAACTCAGATCATGGGACTTGA 4080 0.4248 MGQFSTLQCIVNTLNCFLSPKMEAENSDVSKAEEFKLLANEAFNARKYGQAIDLYTQAIELNSRNAVYWANRAFAHLRLEEYGSAIQDASKAIEVDPKYSKGYYRRGASHLAMGKFKEALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAISAPYTERHSVAESLDFRTIGKGHNSLMPTELAIAAVTVAVMAAGVMLFRTSVATMVAAVVVGLLLLLGAYWWSSYNAGIISRSDLHDLDVEPQYSGARIEGDVVTLDFVKKMMDDFKNQKCLHKRYAYQIVLQTREMLLSLPPLVDINVPDGKHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCISPSAIYLARGNHESKSMNKIYGFEGEVHSKLSDTFVELFAEVFCCLPLAHVINGKVFVVHGGLFSVDGVKLSDIRAINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGPDVTKSFLQENNLELVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTYSAVPHPDVKPMAYANNFLRMSFSVASSSNLNGAKIAPFVISTALTSKQAKPQFEGCRIGLLLGFLVGLINDCAMHFKCHNVIVSLELIEETFWLRVMDVEVVDLYATNPGPIDGSILYDQDKHVSTAVWEGQERGALRCHEHTSKLDQWTLTPKQIELVHKAGFGYLRSIPAISLDNPLISALVERWRRETNTFHLNVGEMTVTLKDVALLLGLAIDGDPVIGITYTACSSVCEKYLGKAPESGYTSGGMVKLSWLKEFFSHCPENASMEVIEQHTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFGNFEQCGRYAWGAAALAFLYRALGNASLKTQSTISGCLTLLQCWSYFYLNIGRPKLNHDPMRDQFPFVLRWKGKQSGPTANRDVIFYRKALDSLKPIDVEWLPYRSIDSTVIPEDIKSTLILGRSKTMLICFDKAERHLPNRCLRQYGMLQSIPEHVEHWERKSRGVDGGVNLSGKMESELTEWMDRHLHIVDGYEEVDKNEYIQWYLKITRRFVGRPISLSSEFQRTNAGLRDIAHIADTFATDGLDADQIESIARIRLIAHECLRDQFGGQAIVPATPQVELGKRVRGKERVRRRGSGKRLRRDDDDAVQYNAASEDEQPQFYGAAMKIEELQLSHVDREAADQAQIYALDNEVDSVLLIHADCDSGGENLQLCDANFELDQSALGPAAGEENNEEPKHIAPEVNNEEPKHLASEDNNEEVSHIADEVNNEELKHAADAVIKEELNQAIVDEKVEEMDVANKVYDAQPPSDVSQEVDNSQLWDASLEIKNSTHEVNNSDHGT 1359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1941 1359 FunFam Serine/threonine-protein phosphatase 5 229 571 - -
Lele28g1941 1359 Pfam Tetratricopeptide repeat 68 98 IPR019734 GO:0005515
Lele28g1941 1359 SUPERFAMILY TPR-like 27 157 IPR011990 GO:0005515
Lele28g1941 1359 ProSiteProfiles TPR repeat profile. 100 133 IPR019734 GO:0005515
Lele28g1941 1359 Pfam PPP5 TPR repeat region 236 302 IPR013235 -
Lele28g1941 1359 Gene3D - 229 571 IPR029052 -
Lele28g1941 1359 SMART tpr_5 66 99 IPR019734 GO:0005515
Lele28g1941 1359 SMART tpr_5 32 65 IPR019734 GO:0005515
Lele28g1941 1359 SMART tpr_5 100 133 IPR019734 GO:0005515
Lele28g1941 1359 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 64 579 - -
Lele28g1941 1359 Gene3D Tetratricopeptide repeat domain 22 175 IPR011990 GO:0005515
Lele28g1941 1359 CDD MPP_PP5_C 250 565 IPR041753 -
Lele28g1941 1359 Pfam Plant mobile domain 713 1062 IPR019557 -
Lele28g1941 1359 MobiDBLite consensus disorder prediction 1144 1163 - -
Lele28g1941 1359 FunFam Serine/threonine-protein phosphatase 5 22 159 - -
Lele28g1941 1359 ProSiteProfiles TPR repeat profile. 66 99 IPR019734 GO:0005515
Lele28g1941 1359 Pfam Calcineurin-like phosphoesterase 310 503 IPR004843 GO:0016787
Lele28g1941 1359 Pfam Tetratricopeptide repeat 101 133 IPR001440 GO:0005515
Lele28g1941 1359 ProSiteProfiles TPR repeat profile. 32 65 IPR019734 GO:0005515
Lele28g1941 1359 PRINTS Serine/threonine phosphatase family signature 340 367 IPR006186 GO:0016787
Lele28g1941 1359 PRINTS Serine/threonine phosphatase family signature 407 433 IPR006186 GO:0016787
Lele28g1941 1359 PRINTS Serine/threonine phosphatase family signature 437 464 IPR006186 GO:0016787
Lele28g1941 1359 PRINTS Serine/threonine phosphatase family signature 373 397 IPR006186 GO:0016787
Lele28g1941 1359 PRINTS Serine/threonine phosphatase family signature 493 513 IPR006186 GO:0016787
Lele28g1941 1359 PRINTS Serine/threonine phosphatase family signature 515 531 IPR006186 GO:0016787
Lele28g1941 1359 PRINTS Serine/threonine phosphatase family signature 310 337 IPR006186 GO:0016787
Lele28g1941 1359 SUPERFAMILY Metallo-dependent phosphatases 259 573 IPR029052 -
Lele28g1941 1359 SMART pp2a_7 278 554 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1941 Lele-ChrLele28 22689770 22705656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1941 312 499 Calmodulin-binding Proteins AT5G63870 36.937 3.40e-39 146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g1941 28 22689770 22705656 Lele01g0117 01 687834 694262 CCT
Lele28g1941 28 22689770 22705656 Lele02g0114 02 673198 675932 CCT
Lele28g1941 28 22689770 22705656 Lele03g0117 03 659997 664027 CCT
Lele28g1941 28 22689770 22705656 Lele04g0114 04 675137 677872 CCT
Lele25g1895 25 26686939 26705922 Lele28g1941 28 22689770 22705656 hybridization
Lele26g1933 26 22887406 22892519 Lele28g1941 28 22689770 22705656 hybridization