Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1928 ATGGGGTCAGAGGATAAGCATTCTTTGGATTCTAAGTCAGCCTGTGGATCAGCAGGTCCTTCTGGTATCTCTCCACTCAGTGTTGCTAAAAAAGTGGAAAGCAGTGCTTGGGGGATACCACATGGGTCTGGGGCACATCATGCATCTAGTGCTGCTAGCTTGTTTTCAAGTTCTCTGCCTGTTCTTCCACACGAAAAGTTGAATTTCCCTGATTCAGTGCGCTATGGCCAACCTTTTGATGATAACATGCCTATGTTTAATAAAGACCACAAAGAAGCTGAAGGGTATGATCCAATTGAAGATGTTGAAACAAATGCTATTGGAAACATGCTTCCTGATGATGAAGAAGAGCTATTAGCTGGGATAACAGATGATTTTGACCTGAGTAGATTGCCCAGCCAACTGGAGGATTTGGATGACAATGATTTGTTTGATAGTGGAGGAGGGCTAGAAATGGATTTTGAGCCCCAAGAGAGTCTTAAGATTGGCATGTCAAAGATGTGCATTACTGACGGAGTTTCTTCAAATGGTATTGGTCATTACGTACTTCCAAATGGTGTGGGACCTGTGGCTGGGGAGCATCCCTATGGAGAACATCCATCAAGAACATTATTTGTGAGAAACATTAATAGTAACGTTGAGGATTCCGAATTAAGATCACTATTTGAGCAATATGGGGATATTAGAACTTTGTACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCTTACTATGATATTCGGGATGCTCGGACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATCCCTAAGGACAACCCCTCTGAAAAAGACATCAACCAAGGAACTCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGATGATCTTCGTATAATATTTGGGGCTTATGGGGAGGTCAAAGAGATAAGGGAAACACCGCATAAGAGACACCATAAATTTATTGAATTTTACGATGTTAGAGCAGCTGAGGCAGCACTTAAGGCGTTAAATCGATGTGATATTGCAGGGAAACGCATCAAACTTGAACCCAGCCGCCCTGGTGGGGCTCGAAGAAATTTGATGCAACAACTGAGTCAAGAGCTGGACCTAGATGAAGCACGGACTTTTAGACATCAAGTAGGTTCACCATTGGCCAATTCCCCTCCTGGTAACTGGGCACAATTTGGCAGTCCAGTCGAACATAGTTACTTAAGTTCTTTTAGCAAGTCTCCTGTAAATAGCAACCATTCATCTGGATTGGCCGCAATTCTCTCCCCTCATGCATCAAACTCTACAAAGATTGCTCCAATTGGCAAGGACTCAGGAAGAGTTAATAGTTCAAATCAGATATTTACTAATGCAGTATCAACACAAGGAGTAGCTTTTCAGAATTCACTGTCCTTTCCAGAGTTAAAAGCAAATGCAAGTTCTAGACCCATTGCTACTTTTGGTGAATCAAGCTCAACTTCATCAAGCATTGGAACACTATCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTACTTCTTACACAGAGCATTCAAACACCTCTGCTTGGTCTTCTTCTTCTTCTTCTGGGCTCCCTTTTACATCTAGTGGTGAGAAGCAGGGTTTCCCATATGCTAACCGACACAGTTCCTTTCTTGGTTCCCACTCCCATCATCATGTGGGATCTGCTCCTTCTGGCCTTCCTCTTGAAAGGCATTTTAACTATTTCCCAGAGTCACCAGAAACTTCTTTCATGAGTCCAGTTTCATATGGGAGTATAAATCACAGTGATGGGAGCTTTATGAACGTTGGCGCTCGTGCAGCGACTGGGGTTATTGGCCTTTCAGGAAATACAACTGAAATTAATTCACCTAGTTTCAGGTTGATGTCACTGCCCAGGCATAGTTCCTTGTTTCTTGGAAATGGTTCTTATTCTGGAGCGGTAACAAATAATGAGGGGTTTACTGAACGTGTTCAGAGTCAACGACCTGAAAATAATGTGACCCAAATTGATAGCAAGAAGCAGTATCAACTTGATCTAGACAAAATTATTAGTGGGGAAGATACAAGGACTACTTTAATGATTAAAAATATTCCTAATAAGTACACTTCGAAGATGTTGCTATCTGCAATTGATGAGAACCACCGGGGCACTTATGACTTTCTCTACTTGCCCATTGACTTTAAGAACAAGTGTAATGTGGGTTACGCTTTCATCAATATGGTGTCTGCTTCACATATCGTGTCCTTCTATAAGGAATTTAATGGGAAGAAATGGGAAAAATTTAATAGCGAAAAAGTTGCATCACTGGCTTATGCACGGATCCAGGGAAAGGCAGCACTTGTGACACACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGCGATGCAGGCCGATTCTCTTTCATTCAGAAGGCCAAGAGATTGTTGACCAGGAACCTTTCATATCCAGCAATTTGAACATTTGCATCCGTCAACCAGATGGGTCATACTCAGGTGATTTGTTGGAAAGCCCGAAGGGCGATTTGGATGACAAGCTGTAG 2553 0.4203 MGSEDKHSLDSKSACGSAGPSGISPLSVAKKVESSAWGIPHGSGAHHASSAASLFSSSLPVLPHEKLNFPDSVRYGQPFDDNMPMFNKDHKEAEGYDPIEDVETNAIGNMLPDDEEELLAGITDDFDLSRLPSQLEDLDDNDLFDSGGGLEMDFEPQESLKIGMSKMCITDGVSSNGIGHYVLPNGVGPVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRIIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRCDIAGKRIKLEPSRPGGARRNLMQQLSQELDLDEARTFRHQVGSPLANSPPGNWAQFGSPVEHSYLSSFSKSPVNSNHSSGLAAILSPHASNSTKIAPIGKDSGRVNSSNQIFTNAVSTQGVAFQNSLSFPELKANASSRPIATFGESSSTSSSIGTLSGPQFLWGSPTTSYTEHSNTSAWSSSSSSGLPFTSSGEKQGFPYANRHSSFLGSHSHHHVGSAPSGLPLERHFNYFPESPETSFMSPVSYGSINHSDGSFMNVGARAATGVIGLSGNTTEINSPSFRLMSLPRHSSLFLGNGSYSGAVTNNEGFTERVQSQRPENNVTQIDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLSAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSASHIVSFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQEIVDQEPFISSNLNICIRQPDGSYSGDLLESPKGDLDDKL 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1928 850 Pfam RNA recognition motif 2 693 789 IPR007201 -
Lele28g1928 850 Gene3D - 191 285 IPR012677 -
Lele28g1928 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 360 IPR000504 GO:0003723
Lele28g1928 850 SMART rrm1_1 695 771 IPR000504 GO:0003723
Lele28g1928 850 SMART rrm1_1 288 356 IPR000504 GO:0003723
Lele28g1928 850 SMART rrm1_1 203 271 IPR000504 GO:0003723
Lele28g1928 850 SUPERFAMILY RNA-binding domain, RBD 695 780 IPR035979 GO:0003676
Lele28g1928 850 MobiDBLite consensus disorder prediction 1 25 - -
Lele28g1928 850 CDD RRM3_MEI2_like 696 781 IPR034454 -
Lele28g1928 850 CDD RRM2_MEI2_like 286 356 - -
Lele28g1928 850 FunFam Protein MEI2-like 1 286 381 - -
Lele28g1928 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 275 IPR000504 GO:0003723
Lele28g1928 850 SUPERFAMILY RNA-binding domain, RBD 199 362 IPR035979 GO:0003676
Lele28g1928 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 268 IPR000504 GO:0003723
Lele28g1928 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 354 IPR000504 GO:0003723
Lele28g1928 850 FunFam MEI2-like protein 5 isoform 2 191 285 - -
Lele28g1928 850 PANTHER RNA RECOGNITION MOTIF-CONTAINING 36 810 - -
Lele28g1928 850 CDD RRM1_MEI2_like 201 277 IPR034453 -
Lele28g1928 850 Gene3D - 286 382 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1928 Lele-ChrLele28 22574311 22579634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1928 199 353 Eukaryotic Initiation Factors Gene Family AT1G71770 26.829 2.56e-11 65.5