Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1925 ATGTCATCCAATAGCAATTTAAAAGCGGAATTGTCGAAGAAGGTTTTGGGTGTGAAATTATGGATTTTAATTGGGATTTGTGTGGGCGCATTTATAGTACTGATTCTTTGTATATTATCTATATGGGTGATGTTTCGGAGAAAGTCTAGAAGATCTCTGGACAGGTATTCTTTATCCCAAATACCAAATATCTCGAAAGATATTAAGGTGGACAAAGTTGGGGTGCAGAATTCTCATGATCACCTCGAGAGCGTATTTATTCCTGTTAATGACAAATCAACTGATAAGAATTTAGATAAGATGCTCGTCCACTTAGGCACGAGCAAATCCAGTGATCATGACAATATCAGTCAGTGCAGCTCAATTTATCATCATGAGAGAGGATTTAGTTCCCTGTCAGGAGAAGAAGGAAGCTCTGCGACTGTAAGGAAGCAATCTACATTGTCATACGGAGGGCTTGTGACTGCTTCTCCATTAGTTGGCTTGCCAGAAATTTCTCATCTTGGATGGGGCCATTGGTTTACCCTTAGGGATCTGGAACTAGCAACGAATCGTTTCTCGGCTGAAAATGTGCTAGGTGAGGGTGGATATGGTGTTGTTTACAAGGGCAGACTGATCAATGGAACTGAGGTGGCAGTGAAGAAAATTCTTAATAACTTGGGACAGGCAGAGAAAGAATTCAGGGTAGAAGTGGAAGCTATAGGCCATGTACGACATAAAAATCTTGTACGCCTACTTGGATACTGCATTGAAGGAGTTCACAGGCTTTTGGTGTACGAATATGTAAATAACGGCAACTTAGAACAATGGTTACATGGGGCTTTGCACCAACATGGAATTCTTACCTGGGAGGCCCGCATGAAAGTTGTACTTGGCACTGCCAAAGCGCTTGCTTACTTGCATGAAGCAATTGAACCAAAAGTTGTTCACCGTGATATAAAGTCTAGCAACATATTAATTGACGATGAGTTTAATGCAAAGGTTTCTGACTTTGGATTGGCTAAACTTTTGGATTCAGGAGAAAGCCACATAACTACTAGAGTAATGGGAACATTTGGTTATGTGGCGCCGGAGTATGCTAATACTGGTTTATTAAATGAGAGGAGTGACATTTACAGCTTCGGTGTCCTCCTCTTGGAAGCAGTCACTGGAAGGGACCCTGTAGACTATGCGCGACCTACTAATGAGGTTAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGAAGAGCTGATGAAGTTGTAGATCCAAGCCTTGAAGTTAAACCATTGACACGAGCTTTAAAGCGTGCCCTTCTGGTCGCAGTTAGGTGTGTTGATCCTGATGCAGACAAGAGACCCAAGATGAGTCAGGTTGTGAGGATGCTTGAAGCTGATGAATATCCCTTCCGAGAGGACCGAAGGAATCGAAAGAGCCGCACTACCAGCATGGAAATCGATTCCATGAAGGATATTCCTGGTTCATCCGAAGCAGAAAAGAAGGCCGGCGAGGCCGAAAACCAATCACAGGAAACAACTGAGGGGTAG 1530 0.4307 MSSNSNLKAELSKKVLGVKLWILIGICVGAFIVLILCILSIWVMFRRKSRRSLDRYSLSQIPNISKDIKVDKVGVQNSHDHLESVFIPVNDKSTDKNLDKMLVHLGTSKSSDHDNISQCSSIYHHERGFSSLSGEEGSSATVRKQSTLSYGGLVTASPLVGLPEISHLGWGHWFTLRDLELATNRFSAENVLGEGGYGVVYKGRLINGTEVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRLLVYEYVNNGNLEQWLHGALHQHGILTWEARMKVVLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNERSDIYSFGVLLLEAVTGRDPVDYARPTNEVNLVEWLKMMVGTRRADEVVDPSLEVKPLTRALKRALLVAVRCVDPDADKRPKMSQVVRMLEADEYPFREDRRNRKSRTTSMEIDSMKDIPGSSEAEKKAGEAENQSQETTEG 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1925 509 Pfam Protein kinase domain 188 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1925 509 CDD STKc_IRAK 192 458 - -
Lele28g1925 509 FunFam Putative receptor-like protein kinase 168 261 - -
Lele28g1925 509 MobiDBLite consensus disorder prediction 486 501 - -
Lele28g1925 509 SMART serkin_6 186 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1925 509 MobiDBLite consensus disorder prediction 461 509 - -
Lele28g1925 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Lele28g1925 509 MobiDBLite consensus disorder prediction 461 479 - -
Lele28g1925 509 Gene3D Transferase(Phosphotransferase) domain 1 262 475 - -
Lele28g1925 509 SUPERFAMILY Protein kinase-like (PK-like) 170 460 IPR011009 -
Lele28g1925 509 ProSiteProfiles Protein kinase domain profile. 186 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1925 509 Coils Coil 206 226 - -
Lele28g1925 509 FunFam Putative receptor-like serine/threonine-protein kinase 262 472 - -
Lele28g1925 509 ProSitePatterns Protein kinases ATP-binding region signature. 192 215 IPR017441 GO:0005524
Lele28g1925 509 Gene3D Phosphorylase Kinase; domain 1 168 261 - -
Lele28g1925 509 PANTHER OS01G0323000 PROTEIN 1 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1925 Lele-ChrLele28 22549653 22553138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1925 17 460 Trihelix Transcription Factor Family AT1G70460 40.000 1.23e-97 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lele28g1925 Pkinase 1.4e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1878 25 26544585 26548770 Lele28g1925 28 22549653 22553138 hybridization
Lele26g1914 26 22748994 22753006 Lele28g1925 28 22549653 22553138 hybridization