Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1915 ATGTGTTCAAGCGCTGTGGAGGCTATTTTCGGGAATAACAATAATGGTTCTTCTCTCGCTGCCATCAAAATGCCTGATCAGCCAAGCTTCAATACTGTGTCTTCTGCAAATACTGACTGTAGCTTCTCAAACTCTGAGAAATTTGGGCATTCAGGAGTAACCACATCAGATGAAGATACTGATGATGGTTATGGAGCAATACCACACAAACAATTGCTAAAGCTCGATCTGAAACACCGGCCAGTGACGGTGAGTGAAGATGCTGAGCCGAAAAAGCCTGTGATTGATTTCACAATTCGGGACTTGACCAGAATCCAGACCCTTCATAGAAGGGTCATAGAGAAGAAGAACCAAAACTCTGTTTCAAGGCTGCAGAAAACAATGCTCAAATCAAATCAAATCAAGGCTGTTACTCCGGCACCGGCGGCTGTGCCGGAGTATTTCAAAAATGGGTATCCCGGCCGGCTTATGGCAACATTGGAATCAGGGGCCAGTCTTGGTTCTGGAGAGTATTTCATGGATGTGTTTGTGGGTACACCTCCAAAACATTTCTCTTTGATACTTGATACAGGAAGTGATCTTAATTGGATTCAATGTGTTCCTTGTTATGTTTGTTTTGAGCAAAGTGGACCTCACTATGATCCCAAAGATTCAAGCTCCTTCAAGAACATAAGCTGCCATGATAAACGATGCAAATTAGTATCATCCCCAGATCCTCCTCAGGCTTGCAAGAATGAGAACCAGAGCTGTCCTTACTTCTACTGGTATGGAGATAGTTCCAATACAACTGGGGATTTTGCTCTTGAGACTTTTACAGTTAATCTCACGACATCTACCGGGAAATCCGAGTTCAGGCGAGTGGAGAATGTAATGTTTGGTTGTGGGCATTGGAATAGAGGTCTCTTCCATGGAGCTGCTGGGTTGCTAGGGTTAGGAAGAGGGCCATTGTCATTTGCTTCTCAGCTTCAATCTCTTTATGGTCATTCATTTTCATATTGCCTTGTGGATAGAAACAGCAACATTAGCAGCAAACTGATATTTGGGGAAGACAAGAAACTTCTCAGCAATCCAAACTTGAATTTCACTTCATTTGTGGGTGGGAAAGAAAATCCAGCTGATACATTTTACTATGTGCAGATAAAATCTGTCATGGTTGGTGGCGAAGTACTGAAAATACCAAAGGAAACTTGGCTTGTATCTTCAGAAGAAGAAGGTGGTAGTCGTGGTGGAACTATCATTGATTCTGGCACTACTCTGACTTATTTTGCAGAGCCTGCTTATGATATTATCAAGGAGGCTTTCATGGAGAAGATAAAGGGCTACCCAATGGTTGAAGAAGGGCTTGTTCCATTAAAGCCATGTTATAATGTTTCTGGGTTTGAAACTATTGAGCTGCCTGATTTTGGGATATTGTTTGAAGATGGAGCTGTTTGGGATTTCCCTGTGGAGAATTACTTCATTGAAATTGAACTAGGTGGTGTTGTTTGTTTGGCAATTCTGGGCACTCCTCATTCAGCTCTCTCCATAATTGGCAACTATCAGCAGCAGAACTTTCACATTCTCTATGATCTCAAGAATTCCAGACTTGGATATGCACCAGTGAATTGTGCTGATTTGTGCTTCTTCCCCTTGCGTTCATCGTCCCAAATGGTTTCCTTCAGGTTTCACCAGTACCAGGTGGTGGGAAGGGCCCTTCCCACAGAGACAGATGAGCACCCCAAGATCTACCGTATGAAGCTTTGGGCCACCAATGAAGTCCGTGCCAAATCCAAGTTCTGGTATTTCCTGAGAAAGCTGAAGAAGGTGAAGAAAAGCAATGGGCAAGTGCTAGCCATTAACGAGATTTATGAGAAAAACCCTACCAAGATTGACAACTATGGAATTTGGCTGCGATATCAAAGTCGAACAGGTTATCATAACATGTACAAGGAATACCGAGATACCACTCTCAATGGTGCCGTTGAACAAATGTACACGGAAATGGCATCGCGTCACCGGGTGAGGTTTCCATGCATCCAGATCATCAAGACAGCCACCATCCCTGCAAAGCTGTGCAAAAGAGAGAGCTCCAAGCAGTTTCACAATTCTAAAATCAAGTTCCCATTGGTGTACAAGAAGGTTAGGCCGCCAAGTAGGAAGCTGAAGACAACATACAAGGCATCAAGGCCCAACTTGTTCATGTGA 2184 0.435 MCSSAVEAIFGNNNNGSSLAAIKMPDQPSFNTVSSANTDCSFSNSEKFGHSGVTTSDEDTDDGYGAIPHKQLLKLDLKHRPVTVSEDAEPKKPVIDFTIRDLTRIQTLHRRVIEKKNQNSVSRLQKTMLKSNQIKAVTPAPAAVPEYFKNGYPGRLMATLESGASLGSGEYFMDVFVGTPPKHFSLILDTGSDLNWIQCVPCYVCFEQSGPHYDPKDSSSFKNISCHDKRCKLVSSPDPPQACKNENQSCPYFYWYGDSSNTTGDFALETFTVNLTTSTGKSEFRRVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFASQLQSLYGHSFSYCLVDRNSNISSKLIFGEDKKLLSNPNLNFTSFVGGKENPADTFYYVQIKSVMVGGEVLKIPKETWLVSSEEEGGSRGGTIIDSGTTLTYFAEPAYDIIKEAFMEKIKGYPMVEEGLVPLKPCYNVSGFETIELPDFGILFEDGAVWDFPVENYFIEIELGGVVCLAILGTPHSALSIIGNYQQQNFHILYDLKNSRLGYAPVNCADLCFFPLRSSSQMVSFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIYEKNPTKIDNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVYKKVRPPSRKLKTTYKASRPNLFM 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1915 727 CDD pepsin_A_like_plant 170 536 IPR034161 -
Lele28g1915 727 FunFam Aspartyl protease family protein 350 539 - -
Lele28g1915 727 Gene3D Acid Proteases 152 349 IPR021109 -
Lele28g1915 727 Pfam Xylanase inhibitor N-terminal 171 348 IPR032861 -
Lele28g1915 727 PRINTS Pepsin (A1) aspartic protease family signature 508 523 IPR001461 GO:0004190|GO:0006508
Lele28g1915 727 PRINTS Pepsin (A1) aspartic protease family signature 177 197 IPR001461 GO:0004190|GO:0006508
Lele28g1915 727 PRINTS Pepsin (A1) aspartic protease family signature 411 422 IPR001461 GO:0004190|GO:0006508
Lele28g1915 727 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 556 677 IPR023573 GO:0003735|GO:0005840|GO:0006412
Lele28g1915 727 FunFam 60S ribosomal protein L18a 550 620 - -
Lele28g1915 727 SUPERFAMILY RplX-like 620 695 - -
Lele28g1915 727 PANTHER OS07G0603500 PROTEIN-RELATED 113 536 - -
Lele28g1915 727 Gene3D - 545 619 - -
Lele28g1915 727 ProSiteProfiles Peptidase family A1 domain profile. 171 532 IPR033121 -
Lele28g1915 727 FunFam Eukaryotic aspartyl protease family protein 147 349 - -
Lele28g1915 727 FunFam 60S ribosomal protein L18a 621 696 - -
Lele28g1915 727 Gene3D - 620 692 - -
Lele28g1915 727 SUPERFAMILY Acid proteases 164 539 IPR021109 -
Lele28g1915 727 Hamap 50S ribosomal protein L18Ae [rpl18a]. 555 618 IPR028877 -
Lele28g1915 727 Gene3D Acid Proteases 353 542 IPR021109 -
Lele28g1915 727 Pfam Xylanase inhibitor C-terminal 376 532 IPR032799 -
Lele28g1915 727 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 186 197 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1915 Lele-ChrLele28 22447794 22454015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1915 546 727 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 90.110 4.55e-118 352