Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1912 ATGAAGGAGAGACAACGTTGGACAGCTGAAGAGGATGCTTTATTACATGCTTATGTCAAACAATATGGTCCTAGGGAATGGAATCTTGTGTCCCAACGCATGAACAAAACCCTTAACAGGGATGCCAAATCCTGCTTAGAAAGGTGGAAGAACTACCTGAAGCCCGGTATCCAAAAGGGGTCTCTTACTGAAGAAGAGAAATCTCTTGTTATCCGTCTTCAAAAGATTTACGGCAATAAATGGAAGAAAATTGCTGCACAAGTCCCGGGTCGCACTGCTAAGAGATTAGGTAAGTGGTGGGAAGTATTTAAAGAGAAGCAGCAGAGAGAGAAAAAGGAGTTCAACAAAACAGTTGACCCAATTGAAGACACCAAATACAATCATATACTCGAGACTTTTGCAGAAAAGCTTGTGAAAGAACGCCCTTCCCCATCCTACCTCATGGCTTCTCCTCCATCAGCTATGCATCCTTCCTGGCTTTACTCTAATAGCACTTTAGCTATTAGGCCACCTTCCTCTACTGTGACGCTAAGTCTCTCTCCCTCAACTCCATTTCGATGGTTACAACCTGAGAAAATGCCAGAGAATGCTTCTCATGTTGTTATTGGGAATGTAAAACCTCATGGAACTATTCCAGGTTTTGGTGATAACATGCTTGTTGTATCTGAGCTGGTTGAATGCTGTAAAGAATTGGAAGAAGGGCACCGGTCATGGTCATCGCATAGGAAGGAAGCTACATGGAGGTTAAGGCGGGTGGAGTTGCAGTTGGAGTCAGAGAAGGCATGTCGTATGCGGGAGAAGATGGAAGAGTTTGAAGCGAAGATTGAAGCTCTTTGGGAAGAACAGATGGCAGCTCTGGATAGAATGGAAGCCGAATACCGGGAGCAGCTAGCTGAACTGAGAAGAGATGCAGAAACCAAGGAGCAGAAATTGACTGCAAAGCACTCAAGACTTAGTAAATTTCTGGAGCAGATAGGTTGCAGACCCAAGCTTGCTGAGTCAAATTATGATGAATTGCTGGTTGAATCTGTTGATCTGCTAGCATTGATCTGGATGACTTTAAGACAAAAATTTAAGATAAAAGAGGCTGCCAAAAAACAAAGAAATCGTGAATGA 1116 0.4337 MKERQRWTAEEDALLHAYVKQYGPREWNLVSQRMNKTLNRDAKSCLERWKNYLKPGIQKGSLTEEEKSLVIRLQKIYGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQREKKEFNKTVDPIEDTKYNHILETFAEKLVKERPSPSYLMASPPSAMHPSWLYSNSTLAIRPPSSTVTLSLSPSTPFRWLQPEKMPENASHVVIGNVKPHGTIPGFGDNMLVVSELVECCKELEEGHRSWSSHRKEATWRLRRVELQLESEKACRMREKMEEFEAKIEALWEEQMAALDRMEAEYREQLAELRRDAETKEQKLTAKHSRLSKFLEQIGCRPKLAESNYDELLVESVDLLALIWMTLRQKFKIKEAAKKQRNRE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1912 371 Pfam Myb-like DNA-binding domain 7 69 - -
Lele28g1912 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Lele28g1912 371 Gene3D - 62 124 - -
Lele28g1912 371 Gene3D - 4 58 - -
Lele28g1912 371 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Lele28g1912 371 CDD SANT 6 53 IPR001005 -
Lele28g1912 371 FunFam MYB-related transcription factor 4 58 - -
Lele28g1912 371 CDD SANT 63 104 IPR001005 -
Lele28g1912 371 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Lele28g1912 371 Coils Coil 366 371 - -
Lele28g1912 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Lele28g1912 371 SMART sant 58 106 IPR001005 -
Lele28g1912 371 SMART sant 3 55 IPR001005 -
Lele28g1912 371 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Lele28g1912 371 Coils Coil 283 317 - -
Lele28g1912 371 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1912 Lele-ChrLele28 22425621 22426952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1912 1 328 MYB Transcription Factor Family AT2G37630 60.326 1.51e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele28g1912 Myb_DNA-bind_6 6.3e-15 CL0123