Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1904 ATGGAAGTGATGGGCAAGCTTAAAGTTAGTTTATCAGATACGAGTGAAAAAGAAGAAGAAGAAGAAGAAGAAGAGATGATGGCTCCTGGATTTAGATTCCACCCCACAGATGAAGAACTTGTAGGGTTTTACCTTCAGAGAAAAGTTCAGAAGAAGCCTCTTCGAATCGAACTCATCAAACAGATTGACATCTACAGATTCCATCCTTGGGATCTTCCAACAGAGAGTAATGGGGTGGAGGGAGAAAGAGAAGGATACTTTTTTTGCAGAAGAGGGAGAAAGTACAGGAACAGCAAGAGGCCCAATAGAGTGACAGTGAGTGGATCTGGTTTCTGGAAAGCTACAGGCATTGACAAACCTATCTATGGAGACCAAGGAGCTCGAAACGGCGTCGTAATTGGCCTCAAGAAGTCATTAGTGTACTATCAAGGAACTGCTGGTAAAGCCTCCAAAACTGAATGGATGATGCATGAGTTTCGTCTTCCTCCCAACAACAACGCTACTGTTGATCATCTTCAACATCTTCATGAAGCTGAAGTTTGGACACTCTGCAAAATATTCAAACGAACCCCATCTCAGAAGAAGTACACACAAGCAGCAATCAAACCCAGCCTAGCTCATTCAACTCCTGAATCAGGAAACTTAAGATCTGACGTCATCAATGGCAACGCATGCTTCACTTTCAAAAACTCAATGATTATTCAGCAAAATGATGAAATGAAGCAGATCAGGAAGAACATTGAAGAGGTTGAAAATGAAAGAAATTACTTATATCTGGATCAGTTAGCTCAAGCTTCACCATCAATAATATCTCACCCTAGCTTTTGGGACCCTGGTGTGATGGAAGAGAATATATTTGCTAATGGAAACTGGGATGAGCTTCAACCTATGGTTCAATTAGCTATGGATGATCCATCCAAAGTTTACTATGATTACACATAG 942 0.4108 MEVMGKLKVSLSDTSEKEEEEEEEEMMAPGFRFHPTDEELVGFYLQRKVQKKPLRIELIKQIDIYRFHPWDLPTESNGVEGEREGYFFCRRGRKYRNSKRPNRVTVSGSGFWKATGIDKPIYGDQGARNGVVIGLKKSLVYYQGTAGKASKTEWMMHEFRLPPNNNATVDHLQHLHEAEVWTLCKIFKRTPSQKKYTQAAIKPSLAHSTPESGNLRSDVINGNACFTFKNSMIIQQNDEMKQIRKNIEEVENERNYLYLDQLAQASPSIISHPSFWDPGVMEENIFANGNWDELQPMVQLAMDDPSKVYYDYT 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1904 313 SUPERFAMILY NAC domain 26 188 IPR036093 GO:0003677|GO:0006355
Lele28g1904 313 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 236 - -
Lele28g1904 313 Pfam No apical meristem (NAM) protein 29 161 IPR003441 GO:0003677|GO:0006355
Lele28g1904 313 MobiDBLite consensus disorder prediction 1 27 - -
Lele28g1904 313 Gene3D NAC domain 36 193 IPR036093 GO:0003677|GO:0006355
Lele28g1904 313 ProSiteProfiles NAC domain profile. 27 189 IPR003441 GO:0003677|GO:0006355
Lele28g1904 313 Coils Coil 233 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1904 Lele-ChrLele28 22389760 22393403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1904 9 214 NAC Transcription Factor Family AT5G39820 48.444 3.73e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele28g1904 NAM 1.2e-33 No_clan