Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1887 ATGAACAATAGCAGTTTCACCAATCAAAAGAATCCCATGGGACCAGATCAAGAACTTGTAGAGCTCCTTTGGCAAAATGGGCAGGTAGTTTTCAACAGCCAAACAACAACGCATAGGAAACCAGTTTTGAATAATTCAGTAAACTCAAGGCAAGTTCAGAATAATGATCACTCAACATTGAGGACTAATGGATCATATGGGAATTCGAGTAATTTGTTTCAAGAAGATGAGACAGTTTCATGGATTCATTACCCATTGGAAGATCCATTGGAACAAGAATTATGTTCAGACTTTTTACCTGAACTTCCATCCTGTGAGATTGACCCTGATAAGCCAAATAAGCAGTTCGAAGAAGAGAAGTTCGCCAAATTCTCTACCGACAGCGCCTCTTCCCATCTGACTGCAACTTCACAACCACCTAATATGAAACCGTCCTCTGTTAAGAAATTCTCGGGAAATCCTATCCTTTCTCCTAGATTTTTTCCTGATTCACCTCAGAAAAACGTTGACTTTAATGGGTCACGAAAAGTCCTCAATTTCTCTCAGTTTTCAGCAGTTCCTGAGGTTGTTTCAGCATTTTCTAATTTACAACATGGAGAAAAAGGTACTGGTAATATGTTGCTGCAGAATGAGGCTGGAGAGGGCTCAGTGATGACAGTTGGTTCAAGTCATCGTGGAAGCAATCAAATTCCTCGAGACCGAGATGTAAGCAGGATTTCAAGCAATGGTGTTTGGACTACAAGTTTGTCAGCAGAGCCTTCTTCATTTAGGGATAATGTTCAGAGTACATTTCCAACGGGCGAAAAAGGGAAATCAGAAACACATGAACCAACTGTCACTTCATCTTCTGGTGGCTCAGACAGTAGTAGTCTTGGAAAAACTTGTTCCCGCTCTACTAGTATCTGTAGCCAGAAAAGAAAAGGAACAGATTCAGAAGAGTTAGAGAAACAAAGTGAGGCCACAGAACTCAAATCAAAAGCTAGAAACAAGGCAGCTCAGCGCACGGCGTCTTCCCGAAGGAACCGTGTTGCTAAAGTGCATAATCTCTCAGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGAGGGCATTGCAACAACTCATACCTCACAGTAACAAGACAGACAAAGCATCTATGCTAGATGAGGCAATAGAATATTTGAAATCACTTCAGTTTCAGCTTCAGATAATGTTGATGGGAGCTGGCATGACACCATTGATGATTCCAGGAATTCAGCACTACATGTCTCAAATGGGTATTGGATTGGCGACGCCTTCTTTGTCTAATCATATGAATATTCCAAGAGTTCCACTTGATCAATCCATATCTATGTCTCAAGCACCAAATCAGACTGTATCATTCCAAGCTCCTGTCCTGGGTCCCTTTAATTACCAAAATCCTTTGCAAAATCCAGCTCTTTCCGAGCAATATGCGTACTGCATGGGCTATCATCATCTTATGCAAAGTGCCTCTCAGCCAATGAATGCATTCAGTTATGGTTCACAGGCAGTACAACATAGTCAAAAAATGATTCCTCCCAGAAGCAGCAATGGACCCCTGAGTGGGGCAGCTAATACCAATGATGCTGTTGGTGGCAGGACGGGTGAATGA 1614 0.4201 MNNSSFTNQKNPMGPDQELVELLWQNGQVVFNSQTTTHRKPVLNNSVNSRQVQNNDHSTLRTNGSYGNSSNLFQEDETVSWIHYPLEDPLEQELCSDFLPELPSCEIDPDKPNKQFEEEKFAKFSTDSASSHLTATSQPPNMKPSSVKKFSGNPILSPRFFPDSPQKNVDFNGSRKVLNFSQFSAVPEVVSAFSNLQHGEKGTGNMLLQNEAGEGSVMTVGSSHRGSNQIPRDRDVSRISSNGVWTTSLSAEPSSFRDNVQSTFPTGEKGKSETHEPTVTSSSGGSDSSSLGKTCSRSTSICSQKRKGTDSEELEKQSEATELKSKARNKAAQRTASSRRNRVAKVHNLSERRRRDRINEKMRALQQLIPHSNKTDKASMLDEAIEYLKSLQFQLQIMLMGAGMTPLMIPGIQHYMSQMGIGLATPSLSNHMNIPRVPLDQSISMSQAPNQTVSFQAPVLGPFNYQNPLQNPALSEQYAYCMGYHHLMQSASQPMNAFSYGSQAVQHSQKMIPPRSSNGPLSGAANTNDAVGGRTGE 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1887 537 MobiDBLite consensus disorder prediction 216 357 - -
Lele28g1887 537 SMART finulus 348 397 IPR011598 GO:0046983
Lele28g1887 537 PANTHER TRANSCRIPTION FACTOR PIF3 6 509 IPR044273 GO:0003700|GO:0006355
Lele28g1887 537 MobiDBLite consensus disorder prediction 127 147 - -
Lele28g1887 537 MobiDBLite consensus disorder prediction 306 329 - -
Lele28g1887 537 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 406 IPR036638 GO:0046983
Lele28g1887 537 Gene3D - 337 398 IPR036638 GO:0046983
Lele28g1887 537 MobiDBLite consensus disorder prediction 506 537 - -
Lele28g1887 537 MobiDBLite consensus disorder prediction 276 305 - -
Lele28g1887 537 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 391 IPR011598 GO:0046983
Lele28g1887 537 Pfam Helix-loop-helix DNA-binding domain 346 392 IPR011598 GO:0046983
Lele28g1887 537 MobiDBLite consensus disorder prediction 216 268 - -
Lele28g1887 537 FunFam Basic helix-loop-helix transcription factor 337 400 - -
Lele28g1887 537 CDD bHLH_AtPIF_like 342 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1887 Lele-ChrLele28 22265031 22267543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1887 3 519 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 31.332 4.13e-43 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele28g1887 HLH 2.9e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1878 26 22431069 22434225 Lele28g1887 28 22265031 22267543 hybridization