Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1876 ATGATTAGTACAATTTTTTTAAGAAGATCTTGTTCCTTAGTCTCAAGGCGCGCTTTCGCCGCCTCCACGTTGATCCAGTATCAGCCCCATCTCACCTCATCAGTCGCCAGCTATGGTGCGGTTGCCGGTAGTGAGATTCAGCCATTCTCCAACTTGTTTAGTTCCGGTGGGTTCAAGTCAAGCCCATTTCATTCACAAGCGGGGCCGTTGAATTTCCGGGCGTCGTTGGTTTCTCGTGCCGAGTATGCTGTTGATGATTGCCCCTTCGAAGAAGGGCCCAAGGTAAACAATGATGATGGCCTTGATATCGGGAAGCTCGGTATTGCTCAGGATATTGTCTCTGCTTTGGCCCAGAGAGGTATATCGAAGCTCTTCCCCATACAGAGAGCTGTACTGGAACCTGCCATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCTATCATGGACAAGATCATTCAGTATAATGCTAAGCATGGACGAGGAAGGGATCCTCTTGCTTTGGTTTTGGCCCCAACTAGAGAACTTGCTCGGCAGGTTGAAAAGGAATTTGCTGAGTCAGCGCCTAATTTGGATACAATTTGTGTTTATGGGGGAACACCCATTTCGGTCCAAATGAGGCAGCTTAACTATGGTGTCGATATTGCAGTTGGCACACCTGGTCGAATTATTGATCTTCTTAATAGAGGTGCTCTAAATTTGAAGGACATTCATTTTGTTGTTCTTGATGAAGCAGATCAGATGCTTCAAGTTGGCTTTCAGGAAGATGTTGAAAAAATCTTGGAGAGGTTGCCTCCCAAACGCCAAACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAGGCAGATTTCTCGCAATTACTTAAATGATCCATTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTACGTTATACTCAATTGCCTCAGATATGTATGGAAAAGCAGGAATTATTGAAACTCTAGTAATTGAACACGCTAAAGGAGGAAAGTGTATCGTTTTCACCCAAACCAAACGCGATGCTGATCGACTATCATATTCCATGTCAAGAAGCCTTAGGTGTGAGGCCTTGCATGGAGATATCTCACAAGCTCAGAGGGAAAGAACTCTCTCTGGCTTTAGAGAAGGCCATTTCAATGTTTTAGTAGCGACTGATGTTGCTTCACGTGGGCTTGACATACCGAATGTTGACCTTGTGATACATTTTGATCTTCCCAATAATTCAGAGATATTTGTTCATCGATCGGGACGGACAGGTCGAGCTGGGAAGAAAGGAACTGCTATCCTTATTTATACTCAAGATCAAACCAGAGCTGTCAAGATTATTGAGCGTGATGTTGGCTGCAGGTTTTCTGAGCTACCGAGAATTACTGTTGAAGGTAAATCAGTAGGCATGTTTAATAGCATGGGTGGTGGCCGATTTAGCAATTCTGGAGGTATGCGGGATCGTAGATTTGGCGAATCAAGTTTTGGCCGTGGTTCTGGATTTGGCCGCTCCAGCTTTGGTAAGTCTGATGAGAGGGGAAGGTATGGTGGAGCTAATTCTGGTCGTTTTGGTGGCCCTGAATCAAGTCAACCACGAAGTGGGTTTGGGGGATCATTTGGTAATTCTTCAGGTGAAAGCTCTGGTCGTTATGGTTCCTTTGGTAGCTTTGGCTCTAGACCATCAGACGGTGGCTTTGGCAGATCTAGCGTAGATCGGTCAGGAAGCACTGGTGGATTTGGGTTTAGTCGTCCAAGTGGGGGCACTGGATTTGGTGGTTCGGATCGTTCTGGTGGTTTTGGCTTGGGTCAATCTAGTGGATTTGGGAATGACCAGAATAAAGATCAGAACAGTGGGAGAAGGCGCTTCTGA 1908 0.4549 MISTIFLRRSCSLVSRRAFAASTLIQYQPHLTSSVASYGAVAGSEIQPFSNLFSSGGFKSSPFHSQAGPLNFRASLVSRAEYAVDDCPFEEGPKVNNDDGLDIGKLGIAQDIVSALAQRGISKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQYNAKHGRGRDPLALVLAPTRELARQVEKEFAESAPNLDTICVYGGTPISVQMRQLNYGVDIAVGTPGRIIDLLNRGALNLKDIHFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIRQISRNYLNDPLTIDLVGDSDQKLADGITLYSIASDMYGKAGIIETLVIEHAKGGKCIVFTQTKRDADRLSYSMSRSLRCEALHGDISQAQRERTLSGFREGHFNVLVATDVASRGLDIPNVDLVIHFDLPNNSEIFVHRSGRTGRAGKKGTAILIYTQDQTRAVKIIERDVGCRFSELPRITVEGKSVGMFNSMGGGRFSNSGGMRDRRFGESSFGRGSGFGRSSFGKSDERGRYGGANSGRFGGPESSQPRSGFGGSFGNSSGESSGRYGSFGSFGSRPSDGGFGRSSVDRSGSTGGFGFSRPSGGTGFGGSDRSGGFGLGQSSGFGNDQNKDQNSGRRRF 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1876 635 Gene3D - 321 480 IPR027417 -
Lele28g1876 635 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 479 IPR001650 -
Lele28g1876 635 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 104 481 - -
Lele28g1876 635 Pfam Helicase conserved C-terminal domain 335 440 IPR001650 -
Lele28g1876 635 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 306 IPR014001 -
Lele28g1876 635 SMART helicmild6 360 440 IPR001650 -
Lele28g1876 635 CDD DEADc 112 307 - -
Lele28g1876 635 Gene3D - 103 310 IPR027417 -
Lele28g1876 635 SMART ultradead3 120 323 IPR014001 -
Lele28g1876 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 461 IPR027417 -
Lele28g1876 635 MobiDBLite consensus disorder prediction 611 626 - -
Lele28g1876 635 FunFam ATP-dependent RNA helicase RhlE 94 309 - -
Lele28g1876 635 MobiDBLite consensus disorder prediction 581 595 - -
Lele28g1876 635 MobiDBLite consensus disorder prediction 488 635 - -
Lele28g1876 635 Pfam DEAD/DEAH box helicase 125 292 IPR011545 GO:0003676|GO:0005524
Lele28g1876 635 MobiDBLite consensus disorder prediction 536 567 - -
Lele28g1876 635 CDD SF2_C_DEAD 339 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1876 Lele-ChrLele28 22173486 22177609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1876 106 472 Eukaryotic Initiation Factors Gene Family AT3G19760 33.600 2.59e-68 226