Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1865 ATGGTGGATTTGCGGGTTAGTGAGGATTTTGAGCTTTTGGAGCGTTGCAATTGGGCTTTTACTAGGGTGCTTTTTGTTTGGGTAATGTCGCGGACGGATAGAATGATGTCGGATCTTAACAAAACTGGTCCTGTGGAAAGAGACACTGAGCAGGCCATTACCGCTTTAAAAAAAGGGGCTTGCTTGCTCAAGTATGGAAGAAGGGGGAAACCCAAGTTTTGTCCCTTCCGCCTTTCAAATGATGAATCTGTTTTAATATGGTTCTCAGGGAAGGAGGAGAAACACCTTAAACTTAGCCATGTCTCCAGAATCATCTCTGGACAGCGCACACCAATCTTTCAAAGATATCCACGGCCAGAAAAGGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATTTGCAAAGACAAAGATGAGGCTGAAGTTTGGTTCAGTGGTTTGAAAGCATTAATAGCACGTAGCCATCACCGGAAGTGGAGAACAGAATCAAGAAGTGATGGTATTCCTTCTGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTAAGTTCTCCATTTGGTAGTAATGAAAGCTTACAGAAGGATAGTGGAGATCACCTTCGCCTTCATAGTCCTTATGAGAGTCCCCCAAAGAATGGTTTGGATAAAGCATTATCTGATGTGATTTTGTATGCTGTTCCTCCAAAGGGATTCTTCCCTCCAGATTCTGCCAGTGGTTCAGTCCACTCCGTTTCATCAGGGGGTTCTGACAGTGTACATGGCCATATGAGGACAATGCCTATGGATGCTTTTAGAGTTAGTCTTTCAAGTGCTGTCAGTTCATCCAGCCAAGGTTCTGGCCATGATGATGGTGATGCATTAGGAGATGTTTTCATTTGGGGAGAAGTCACAGGTGATGGTGTTTTGGGTGGTGGGACTCAGCGAGTTGGCAGTTGTGTTGGTGTAAAAATGGATTCTCTATTGCCCAAAGCCTTGGAATCTGCAGTAGTACTTGATGTTCAGAATATTGCTTGTGGTGGACGGCATGCAGCCTTGGTGACTAAGCAAGGAGAAATTTTTTCTTGGGGCGAAGAATCAGGAGGTAGGCTTGGTCATGGTGTTGATTCTGATGTTCTTCATCCAAAGCTTGTAGAAGCTCTAAGTAATACAAATATTGAACTTGTTGCTTGTGGGGAGTATCATACATGCGCTGTGACACTTTCTGGTGATCTTTACACATGGGGTGATGGTACCTACAATTATGGTCTCCTTGGGCATGGAAATCAAGTGAGTCACTGGGTCCCCAGAAGAGTAAATGGGCCCTTGGAGGGTATGCATGTTTCATCTATCTCATGTGGACCATGGCACACTGCAGTAGTAACCTCTTCTGGGCAATTATTTACTTTTGGCGATGGTACATTTGGTGTTCTAGGTCATGGGGACCGAAAAAGTGTTTCAATACCAAGGGAAGTAGAGTCCCTTAAGGGACTTCGTACTGTGCGTGCTGCTTGTGGTGTTTGGCATACTGCTGCTGTAGTGGAGGTCATGGTTGGAAATTCAAGTTCCAGCAATTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGTGACAAGGGTCGACTTGGGCATGGTGACAAGGAAGCAAAACTTGTTCCTACCTGTGTTGCAGCTCTTGTTGAGCCCAACTTTTGTCAAGTTGCTTGTGGACATAGTTTGACTGTTGCACTTACAACACAGGGCCACGTTTATACAATGGGTAGTCCTGTCTATGGTCAGTTGGGGAATCCCCAAGTTGATGGGAAGCTACCAACACGTGTTGAGGGAAAGCTTTCAAAGGGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACCGAGGTTTACACTTGGGGCAAGGGTGTGAATGGACGTTTAGGCCATGGGGATACAGATGATAGAAGCACCCCGACATTAGTAGAAGCTCTTAAAGACAAGCAAGTCAAAAGCATTGCTTGTGGTACTAATTTTACTGCAGCTATCTGTCTTCATAAGTGGGTCTCTGGTGTTGACCAGTCCATGTGTTCTGGTTGCCGTCTGCCATTTAATTTTAAAAGAAAACGTCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGCAGCAGTAAGAAGTCTCTTAAAGCTTCAATGGCACCAAATCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTCAATAAACTAAGAAAAGCTATTGAAACTGATTCTTCATCGCATTCTTCTGTGAGAAGAAGAGGAAGTGTCAATCAGGGATCATTTGAGTTTATTGATACGGATGATAAGTTGGATTCAAGATCTCGTAATCAGCTTGCAAGATTCTCTGCAATGGAATCCTTGAAGCAAGTGGAAAGCAGGTCTTCGAAGAAAAACAAGAAATTGGAATTCAACAGTAGTCGTGTGTCACCTGCTCCAAATGGAGGCTCCCAGTGGGGAGCACTAAATATTTCTAAATCTTTCAATCCTGTTTTTGGATCATCGAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCTCGAGCAACATCCCCCATTTCCAGACGGCCCAGTCCACCTCGTTCAACTACTCCAACGCCAACACTGGGGGGACTTACCTCCCCAAAGATTGTGGTGGATGATGCTAAGAGGACAAATGATAGCCTCAGTCAGGAGGTTATTAAATTAAGAGCGCAGGTGGAAAATCTGACTCACCAAGCTCAACTTCAAGAAATTGAGCTAGAAAGAACGACTAAACAGCTGAAAGAAGCAATAGCCATTGCTGGTGAAGAAAGTGCTAAATGTAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCTCAGTTGAAGGAAATGGCTGAAAGGCTACCTGTTGGAGCAGCAAGGAACGTCAAATCACCTTCTCTTGCTTCTTTTAGTTCCAGTCCTGGTTCTAATGAACTCAGCATTGCTTCCGTTGAGCGATTGAATGTTCAGGCTACTAACATAGAACCAGACTTGACGGGGTCAAACAATCAGTTACTGTCAAATGGATCAAGCACCATCAATAACCGTATTTCAGGTCACAATAAACTGAGCCAGTCAGATGCATCAAGTAGAAATGGAAGCAGAACAAAGGAAAGTGAATCTCGTAGTGAGAATGAACGGGTTGAGCAGGATGAACCCGGTGTATATATCACACTTACTTCCCTACCAGGAGGTGTAATAGATCTGAAGAGAGTTCGCTTCAGTCGGAAGCGTTTTAGTGAAAAACAGGCAGAACAATGGTGGGCTGAGAACCGTGCACGCGTGTATGAACAATACGATGTGCGCATGGTTGACAAATCCGCTGTTGGTGTGGGGAGTGAGGACCTGGCTCATTGA 3411 0.44 MVDLRVSEDFELLERCNWAFTRVLFVWVMSRTDRMMSDLNKTGPVERDTEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALIARSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLSSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALSDVILYAVPPKGFFPPDSASGSVHSVSSGGSDSVHGHMRTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEVTGDGVLGGGTQRVGSCVGVKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLVEALSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPRRVNGPLEGMHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTVALTTQGHVYTMGSPVYGQLGNPQVDGKLPTRVEGKLSKGFVEEIACGAYHVAVLTSRTEVYTWGKGVNGRLGHGDTDDRSTPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKAIETDSSSHSSVRRRGSVNQGSFEFIDTDDKLDSRSRNQLARFSAMESLKQVESRSSKKNKKLEFNSSRVSPAPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRAQVENLTHQAQLQEIELERTTKQLKEAIAIAGEESAKCKAAKEVIKSLTAQLKEMAERLPVGAARNVKSPSLASFSSSPGSNELSIASVERLNVQATNIEPDLTGSNNQLLSNGSSTINNRISGHNKLSQSDASSRNGSRTKESESRSENERVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYDVRMVDKSAVGVGSEDLAH 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1865 1136 MobiDBLite consensus disorder prediction 171 201 - -
Lele28g1865 1136 CDD PH_PLC_plant-like 47 157 - -
Lele28g1865 1136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 757 IPR013083 -
Lele28g1865 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 409 IPR000408 -
Lele28g1865 1136 Gene3D - 245 420 IPR009091 -
Lele28g1865 1136 Gene3D - 421 524 IPR009091 -
Lele28g1865 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 409 461 IPR000408 -
Lele28g1865 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 581 629 IPR000408 -
Lele28g1865 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 464 513 IPR000408 -
Lele28g1865 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 528 577 IPR000408 -
Lele28g1865 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 634 681 IPR000408 -
Lele28g1865 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 358 406 IPR000408 -
Lele28g1865 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 581 632 IPR000408 -
Lele28g1865 1136 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 92 970 - -
Lele28g1865 1136 MobiDBLite consensus disorder prediction 1013 1050 - -
Lele28g1865 1136 SUPERFAMILY PH domain-like 48 156 - -
Lele28g1865 1136 FunFam PH, RCC1 and FYVE domains-containing protein 1 519 690 - -
Lele28g1865 1136 MobiDBLite consensus disorder prediction 1013 1072 - -
Lele28g1865 1136 FunFam Putative E3 ubiquitin-protein ligase HERC1 691 759 - -
Lele28g1865 1136 FunFam PH, RCC1 and FYVE domains-containing protein 1 267 518 - -
Lele28g1865 1136 MobiDBLite consensus disorder prediction 818 832 - -
Lele28g1865 1136 MobiDBLite consensus disorder prediction 1051 1069 - -
Lele28g1865 1136 Pfam Pleckstrin homology domain 50 156 IPR001849 -
Lele28g1865 1136 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 689 751 IPR017455 -
Lele28g1865 1136 MobiDBLite consensus disorder prediction 165 220 - -
Lele28g1865 1136 MobiDBLite consensus disorder prediction 863 892 - -
Lele28g1865 1136 Gene3D - 47 165 IPR011993 -
Lele28g1865 1136 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 503 513 IPR000408 -
Lele28g1865 1136 SUPERFAMILY FYVE/PHD zinc finger 685 756 IPR011011 -
Lele28g1865 1136 Coils Coil 951 971 - -
Lele28g1865 1136 MobiDBLite consensus disorder prediction 798 832 - -
Lele28g1865 1136 Pfam Transcription factor BRX N-terminal domain 946 979 IPR027988 -
Lele28g1865 1136 Pfam Transcription factor regulating root and shoot growth via Pin3 1062 1117 IPR013591 -
Lele28g1865 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 296 357 IPR000408 -
Lele28g1865 1136 Coils Coil 895 936 - -
Lele28g1865 1136 PRINTS Chromosome condensation regulator RCC1 signature 570 588 IPR000408 -
Lele28g1865 1136 PRINTS Chromosome condensation regulator RCC1 signature 410 426 IPR000408 -
Lele28g1865 1136 PRINTS Chromosome condensation regulator RCC1 signature 360 376 IPR000408 -
Lele28g1865 1136 PRINTS Chromosome condensation regulator RCC1 signature 628 649 IPR000408 -
Lele28g1865 1136 PRINTS Chromosome condensation regulator RCC1 signature 467 481 IPR000408 -
Lele28g1865 1136 PRINTS Chromosome condensation regulator RCC1 signature 341 354 IPR000408 -
Lele28g1865 1136 PRINTS Chromosome condensation regulator RCC1 signature 451 467 IPR000408 -
Lele28g1865 1136 Pfam Unstructured region between BRX_N and BRX domain 987 1056 - -
Lele28g1865 1136 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 344 354 IPR000408 -
Lele28g1865 1136 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 451 461 IPR000408 -
Lele28g1865 1136 Gene3D - 525 696 IPR009091 -
Lele28g1865 1136 ProSiteProfiles BRX domain profile. 1063 1118 IPR013591 -
Lele28g1865 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 410 464 IPR000408 -
Lele28g1865 1136 Pfam FYVE zinc finger 685 751 IPR000306 GO:0046872
Lele28g1865 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 633 684 IPR000408 -
Lele28g1865 1136 CDD FYVE_like_SF 694 747 - -
Lele28g1865 1136 SUPERFAMILY RCC1/BLIP-II 296 686 IPR009091 -
Lele28g1865 1136 SMART fyve_4 683 752 IPR000306 GO:0046872
Lele28g1865 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 465 516 IPR000408 -
Lele28g1865 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 529 580 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1865 Lele-ChrLele28 22068824 22077184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1865 955 1127 Major Intrinsic Protein MIP AT1G31880 32.044 9.23e-14 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1822 25 26018593 26029122 Lele28g1865 28 22068824 22077184 hybridization
Lele26g1858 26 22231816 22240127 Lele28g1865 28 22068824 22077184 hybridization