Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1864 ATGAAATCAGAAGTTGCTGAGGAGTTAGGCTTGACTGAAAAGCAAGTATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAAACATTTGCTAATGGACGACACGATCGTTCAAGTGGTGTCATCCAGGATCATGTAAGTGGATTAGGGCAAGATTCATGTGGAAGCACTAAACATGGTGATTATAAGCATCTTGATCTGAAAGAGGTTGAGAGTCATGGCCTCTATGGCAATGACTTTTCTGTTGCAGATATGACTTATGAACATAATAGACACTATAATGAAGATGATGGTGGAATGGATAACACATCTTCTGAGAGTAGCTCATCTTTACGTGATCAGTTGTTCTCTCAAGGTCATGATCCATATAATATGGAGCCTTCTAGATATCTGACACCTAACAGAGCTCTGCCACCTTTAGTTCCCAAAGCTGCAATTAACACTGGATATAAACCATCAGGTTATTTGAAAGTGAAGGGTGAGATAGAAAATGCTGCTATAACTGCTGTCAAGAAGCAATTAGGAAGGAACTATCAGGAAGATGGTCCACTGCTTGGTGTAGAATTTGATCCAGTTCCTCCAGGAGCATTTGAGTGCCAAATTGCAGATCCAGATGATGGTAGGGACAGCTTTATGAATAGATCTGGCCTAAGCCATGATAAGGGTCCTCCAGAAATTTCTGCCGTGAAAAAGCAACCCGTCCTTAACCCTAGGTATGACTCCAAATATAATTCCCATGATTTACATATGGAAGTTGGAGATCTTGGCTCCTTGCATGACACTGACTTGCTGGATAAGAAACCGTGCCGACACAAGCAAGGTCGGACATTTCAGAGTTATGCCAATCATTTACCTCGTAGAAACTCCTCCTTGGAGTTGTATGAAGATCCCACTGGAGAAGTGCCTGCTTATAAGCATGGTGAAGGGATGAGATCTGATTCTGCTTCTAACCATAGCGATCACTTTGAAGGGGGCGTTGTGGGTTCAAAGAAAATTCAGAGGAGTGAACATGTAAAATCTAAGTCTTCAAATTCATTAAGAAATGCTCGCATTTCACTTGATACTGAAACGATAGCAAAGGTCCACTATCTAGCTGTGACTTATCTTTGCTTTCAGTCTGCAGCAGAGATACTTTCTAGCTTTAGTGAAGATGAAACCGCTGAAACCAGTTCTTCGCCGGACCAAAGCAGCTGGTCGTTGATAGGGGTTAGAAAATTTGAGGAATATGTACAGTACTCTAAAAAAAATGACAGAGATACATTTTGGCCAAGAACATCATGATCCTTTGGCTTGGCCGCTAGCTAA 1323 0.4135 MKSEVAEELGLTEKQVSGWFCHRRLKDKRLLKDETFANGRHDRSSGVIQDHVSGLGQDSCGSTKHGDYKHLDLKEVESHGLYGNDFSVADMTYEHNRHYNEDDGGMDNTSSESSSSLRDQLFSQGHDPYNMEPSRYLTPNRALPPLVPKAAINTGYKPSGYLKVKGEIENAAITAVKKQLGRNYQEDGPLLGVEFDPVPPGAFECQIADPDDGRDSFMNRSGLSHDKGPPEISAVKKQPVLNPRYDSKYNSHDLHMEVGDLGSLHDTDLLDKKPCRHKQGRTFQSYANHLPRRNSSLELYEDPTGEVPAYKHGEGMRSDSASNHSDHFEGGVVGSKKIQRSEHVKSKSSNSLRNARISLDTETIAKVHYLAVTYLCFQSAAEILSSFSEDETAETSSSPDQSSWSLIGVRKFEEYVQYSKKNDRDTFWPRTSXSFGLAAS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1864 440 MobiDBLite consensus disorder prediction 317 349 - -
Lele28g1864 440 Gene3D - 1 36 - -
Lele28g1864 440 MobiDBLite consensus disorder prediction 106 123 - -
Lele28g1864 440 Pfam Homeodomain 3 29 IPR001356 GO:0003677
Lele28g1864 440 CDD homeodomain 1 29 IPR001356 GO:0003677
Lele28g1864 440 SUPERFAMILY Homeodomain-like 2 38 IPR009057 -
Lele28g1864 440 MobiDBLite consensus disorder prediction 305 349 - -
Lele28g1864 440 ProSiteProfiles 'Homeobox' domain profile. 1 30 IPR001356 GO:0003677
Lele28g1864 440 MobiDBLite consensus disorder prediction 210 231 - -
Lele28g1864 440 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 362 - -
Lele28g1864 440 MobiDBLite consensus disorder prediction 97 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1864 Lele-ChrLele28 22058315 22063335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1864 1 206 Homeobox Transcription Factor Family AT4G03250 57.692 7.25e-55 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele28g1864 Homeodomain 1.7e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1821 25 26002418 26010474 Lele28g1864 28 22058315 22063335 hybridization
Lele26g1857 26 22216796 22224926 Lele28g1864 28 22058315 22063335 hybridization