Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1860 ATGCAGTCCGGAAATATTTTTGGACGTAAGGAAAAACTCTTGATAGTTGTGGCTACTACAAGGAGGCTACCTTCAGATTCTGGTGGTGCCTTTGCTGACTGGGCAACCACATCCTCCGCCGGACGCGTTGCCCCCGCCCCTGACGATCTCTCTTTGGGATTCAATGCCGGTCCCTCCTCCGCCGATGGGGGGACCCCGGCCGGTATTTGGTCTGGGGGTTCTAGGTCAGTTAACTTTGGCCATTCCGAGATGGGAATGGTGGGGCTTCGAGATGTGTTTGTGGTGGCGCCTGCTTCTTCGTACCATAACGACGTTGTCATGCCCGATCCTCACAACGCCGCCGCTGCCATACATGGCGTCGGCGTTATCCCACTCCTTACGGCGGGTCCTTGTCTCGACGGTGACACCAGCAATATGCTCAATCTCAGCAGTCATAATCGAAGCCGTAGCGGTGGAATTCAGCTCTGGCAGGATCATTACTTGAAGAAGCAAGCCCTTACCGGACACAACTGTACGACTAGCTCCGGCAATCTAGCCCACAGCGGCGGCGGAGGGTTAAGCGGCTCGGCTTTGAGCTCAGGAAGTACAACATGCCAAGACTGCGGAAATCAAGCGAAGAAAGATTGTAGTCATAGAAGGTGCAGAACGTGTTGCAAGAGCCGAGGTTTTGATTGCCCTACTCATGTGAAGAGCACGTGGGTTTCCGCTGCTCGTCGGAGGGAACGCCAGCTTATGGCCGCCACCGCTTCAGCCGGTGGTGGTAGTGGGTTCAATGGGGCTACATCCGTCGCCAAGAAACCTAGACTCGTCGCCTCGCAAACCACAACCACCTCTCGTACTTCTACTTCAAACACAACCCCTCCTCGAAGCTTCGACACTAGCTCTAGCCATCAAGATGCGAGTTTCAAAGAGTCATTGCCTGGTCAAGTACGTGCGCCGGCGGTGTTCAAGTGCGTTCGTGTGACGGCGTTGGATGACGGGGATGACGAGTATGCTTATCAAGCAGTTGTGAAGATTGGTGGCCATGTGTTCAAAGGGTTTCTGTATGATCAAGGGCTTGAACATGGAGAAGGCTATCCTAATCTCTCTGAGCTGCATTTGGGCGGCGTCGGCGGGGGGAATGGCGGAAGCAGCGGCGGTGCTGGAAGAAATGGAGGTACTTCTTCATCCCCAATGCTGGATCCTTCTGATGTATACGCCGCCGCTTCAGGTGGGGCTTTTCTCGCCGGTTCAACCTATGGTAATGACATGAATTGA 1257 0.5449 MQSGNIFGRKEKLLIVVATTRRLPSDSGGAFADWATTSSAGRVAPAPDDLSLGFNAGPSSADGGTPAGIWSGGSRSVNFGHSEMGMVGLRDVFVVAPASSYHNDVVMPDPHNAAAAIHGVGVIPLLTAGPCLDGDTSNMLNLSSHNRSRSGGIQLWQDHYLKKQALTGHNCTTSSGNLAHSGGGGLSGSALSSGSTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVKSTWVSAARRRERQLMAATASAGGGSGFNGATSVAKKPRLVASQTTTTSRTSTSNTTPPRSFDTSSSHQDASFKESLPGQVRAPAVFKCVRVTALDDGDDEYAYQAVVKIGGHVFKGFLYDQGLEHGEGYPNLSELHLGGVGGGNGGSSGGAGRNGGTSSSPMLDPSDVYAAASGGAFLAGSTYGNDMN 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1860 418 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 197 239 IPR006510 -
Lele28g1860 418 MobiDBLite consensus disorder prediction 267 303 - -
Lele28g1860 418 MobiDBLite consensus disorder prediction 370 394 - -
Lele28g1860 418 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 139 401 IPR007818 GO:0003700|GO:0006355
Lele28g1860 418 Pfam Domain of unknown function (DUF702) 195 354 - -
Lele28g1860 418 MobiDBLite consensus disorder prediction 380 394 - -
Lele28g1860 418 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 306 353 IPR006511 -
Lele28g1860 418 MobiDBLite consensus disorder prediction 247 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1860 Lele-ChrLele28 22011061 22013427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1860 14 398 C2H2 Transcription Factor Family AT5G12330 52.798 5.16e-107 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lele28g1860 DUF702 1.9e-61 No_clan