Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1859 ATGTTCAGTTACAAATCAGCCACTATAAATTCCCTTCAACAAAGCAAGAACTTTACTCAAAACCCTACTATCTTCACTTTCTCTTCCCTTTTCCCTTTTCCCTGTGATACCATGGCTAGTCATGGCTATGGAGTCTCCCTCCCCCAGCAACACTCTCAAACACCAAATCACGAATCCTTCCAACAAAACTCCCAAAGCTTGGCCCCACTGTCCACAGGAACTAGGCATCATCATCTTGTGGGTGGTGGTGGTGACGCTGCCTCCCCATTTGTAGCCCACTGTCCACCACCGCCGTCGCCGCCTTTCCCTGACCAATACAACATCGGAGGCGGTGGCAGCAGCGGCAAAAGCTGCAACAAAAAAGGCAATATGCACAAAAAGCTGAAGCAACAACCAAGGACAGGTAAAGGAAGGCCAGTTGGTGCCAAGAACAAGCCTAAACCTCCGATTTTGATCACCAAAATGGAGGAAGAAGCTCTGAAACATGTCATCATCGAGATCTCTGCCGGCTGTGACATCGTGGCGGAGCTGATCAAGTTCGCACAAATTCATGATGTCGGACTAACTGTTCTTAGTGGGTCTGGTTCTGTAACTGACGTCACTCTCAGCCACACATTTTCGCATACACCTTCTTTGATGACCCTCCATGGAACCTTTACCATGCTATCTCTTTCTGGTACTTACATAAAGTCCCCTCTTTCCTCATCGTCCTCGTCATCATCATTGTTTCCTGTTGCTGTCCCTTCCTCTTCGCCTGGATACTCGTCTTTCAGTATATGTCTTGCAGGAAGTCAAGGTCAAATCATTGGAGGAGTCATAGCTGGAAGAATCATCGCTGCGAGTGTTGTTGTTGTGGCGGCTGCATTTTACAAGAAACCTATGTTTCACAGAGTCCTAAATAATGAAACTAATAGTCTTCTTGTCGATCTCTCTGATGTTTTCGTTGATCATGACGCACTCATCAGGGGTGGCACAAACGCTAGTTTCATTGGTTTGCTTGCTTCCTTCAATAGTACTGCTGTCACCCCTCAAGCACCGTGA 1041 0.4707 MFSYKSATINSLQQSKNFTQNPTIFTFSSLFPFPCDTMASHGYGVSLPQQHSQTPNHESFQQNSQSLAPLSTGTRHHHLVGGGGDAASPFVAHCPPPPSPPFPDQYNIGGGGSSGKSCNKKGNMHKKLKQQPRTGKGRPVGAKNKPKPPILITKMEEEALKHVIIEISAGCDIVAELIKFAQIHDVGLTVLSGSGSVTDVTLSHTFSHTPSLMTLHGTFTMLSLSGTYIKSPLSSSSSSSSLFPVAVPSSSPGYSSFSICLAGSQGQIIGGVIAGRIIAASVVVVAAAFYKKPMFHRVLNNETNSLLVDLSDVFVDHDALIRGGTNASFIGLLASFNSTAVTPQAP 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1859 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 289 IPR005175 -
Lele28g1859 346 ProSiteProfiles PPC domain profile profile. 157 311 IPR005175 -
Lele28g1859 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 124 299 IPR014476 GO:0003680
Lele28g1859 346 MobiDBLite consensus disorder prediction 110 148 - -
Lele28g1859 346 Gene3D - 160 319 - -
Lele28g1859 346 MobiDBLite consensus disorder prediction 44 75 - -
Lele28g1859 346 MobiDBLite consensus disorder prediction 44 72 - -
Lele28g1859 346 CDD DUF296 164 278 IPR005175 -
Lele28g1859 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1859 Lele-ChrLele28 22002036 22003076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1859 133 302 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 39.181 9.74e-33 121