Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele28g1824 | ATGTCAAGTGGACCAACGCACTGGTGTTATGAGTGTGGACGTCCGATTGAGCTTGAAGGGAGAGAAGTCACTTGCCCTTATTGTCATGAAGGCTTTGTGCAAGAGCTTAATGAGAGGCATGAGTTCCAACCATATAATGCTCTTGAAGAGTTTCAGCCCATGCCTGACTTTTTTGATGCCATACATGCCTTTATGGCACAGAGAGCTCCCGTACCAAGATTTGGGCTTATAGATGCTTTTGACAGTTTCATGAGGCAGAGAATAGCTAGGCAATACCCCAACTTTGATCTTATACAAAGGTCTGATAACGCCCTATTTCCTGAATGGAGTCAGGATTTTTTCAATTCTGGCCCTTCTATCGTATTTCATGGTGCTGGAGACGAACCAAGGTCTATTGATTTTGGCTGTTTATTGATGACCCCAGGACTGGAAGCATTTATTCAACGGCTCACCGTGAATGATCAGAGAGGTCCTCCTCCAGCCTCACATTCTTCAATTGATGCAATGCCTACCATTAAGATCACACCAGCGCATCTTCGCTCTGATTCACACTGTCCAGTTTGTCAAGAAAAATTTGAGCTAGGCTCTGAGGCTAGGAAAATGCCCTGTAACCATATTTATCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCCTGTCCTGTTTGCCGCGTTGAGCTTCCACCACCAGGACAGAGCAGTTCCCGTGGTGGGACTCGTGGAGGAAGGAATGCTAGTAGCAGCAGTAGCCGTCGTGATAGCTTAAGGAGGCAGAACCAAGGAGGGAGAAATCCACTATCAACTTGGTGGCCATTCTGA | 825 | 0.4618 | MSSGPTHWCYECGRPIELEGREVTCPYCHEGFVQELNERHEFQPYNALEEFQPMPDFFDAIHAFMAQRAPVPRFGLIDAFDSFMRQRIARQYPNFDLIQRSDNALFPEWSQDFFNSGPSIVFHGAGDEPRSIDFGCLLMTPGLEAFIQRLTVNDQRGPPPASHSSIDAMPTIKITPAHLRSDSHCPVCQEKFELGSEARKMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPPGQSSSRGGTRGGRNASSSSSRRDSLRRQNQGGRNPLSTWWPF | 274 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele28g1824 | 274 | SUPERFAMILY | RING/U-box | 165 | 232 | - | - | |
| Lele28g1824 | 274 | CDD | RING-H2_RNF126_like | 185 | 226 | - | - | |
| Lele28g1824 | 274 | FunFam | E3 ubiquitin-protein ligase RING1-like | 149 | 232 | - | - | |
| Lele28g1824 | 274 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 233 | IPR013083 | - | |
| Lele28g1824 | 274 | Pfam | Ring finger domain | 184 | 226 | IPR001841 | - | |
| Lele28g1824 | 274 | SMART | ring_2 | 185 | 225 | IPR001841 | - | |
| Lele28g1824 | 274 | Pfam | zinc-ribbon | 6 | 36 | IPR039525 | GO:0061630 | |
| Lele28g1824 | 274 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 94 | 230 | - | - | |
| Lele28g1824 | 274 | MobiDBLite | consensus disorder prediction | 234 | 274 | - | - | |
| Lele28g1824 | 274 | MobiDBLite | consensus disorder prediction | 231 | 274 | - | - | |
| Lele28g1824 | 274 | ProSiteProfiles | Zinc finger RING-type profile. | 185 | 226 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele28g1824 | Lele-ChrLele28 | 21559797 | 21560621 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele28g1824 | 110 | 254 | C3H Transcription Factor Family | AT1G68180 | 35.862 | 3.55e-24 | 95.9 |