Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1822 ATGTCAAGTGGACCAACGCACTGGTGTTATGAGTGTGGACGTCCGATTGAGCTTGAAGGGAGAGAAGTCACTTGCCCTTATTGTCATGAAGGCTTTGTGCAAGAGCTTAATGAGAGGCATGAGTTCCAACCATATAATGATCTTGAAGAGTTTCAGCCCATGCCTGACTTTTTTGATGCCATACATGCCTTTATGGCGCAGAGAGCTCCCGTACCAAGATTTGGGCTTATAGATGCTTTTGACAATTTCATGAGGCAGAGAATAGCTAGGCAATACCCCAACTTTGATCTTATACAAAGGTCTGATAACGCCCTATTTCCTGAATGGAGTCAGGATTTTTTCAATTCTGGCCCTTCTATCGTATTTCATGGTGCTGGAGACGAACCAAGGTCTATTGATTTTGGCGGTTTATTGATGACCCCAGGACTGGAAGCATTTATTCAACGGCTCACCATGAATGATCATAGAGGTCCTCCTCCAGCCTCACATTCTTCAATTGATGCAATGCCTACCATTAAGATCACACCAGCGCATCTTCGCTCTGATTCACACTGTCCAGTTTGTCAAGAAAAATTTGAGCTAGGCTCTGAGGCTAGGAAAATGCCCTGTAACCATATTTATCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCCTGTCCTGTTTGCCGCGTTGAGCTTCCACCACCAGGACAGAGCAGTTCCCGTGGTGGGACTCGTGGAGGAATGAATGCCAGTAGCAGCAGTAGCCGTCATGATAGCTTAAGGAGGCAGAACCAAGGAGGGAGAAATCCACTATCAACTTGGTGGCCATTCTGA 825 0.4582 MSSGPTHWCYECGRPIELEGREVTCPYCHEGFVQELNERHEFQPYNDLEEFQPMPDFFDAIHAFMAQRAPVPRFGLIDAFDNFMRQRIARQYPNFDLIQRSDNALFPEWSQDFFNSGPSIVFHGAGDEPRSIDFGGLLMTPGLEAFIQRLTMNDHRGPPPASHSSIDAMPTIKITPAHLRSDSHCPVCQEKFELGSEARKMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPPGQSSSRGGTRGGMNASSSSSRHDSLRRQNQGGRNPLSTWWPF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1822 274 CDD RING-H2_RNF126_like 185 226 - -
Lele28g1822 274 FunFam E3 ubiquitin-protein ligase RING1-like 149 232 - -
Lele28g1822 274 SUPERFAMILY RING/U-box 165 232 - -
Lele28g1822 274 Pfam Ring finger domain 184 226 IPR001841 -
Lele28g1822 274 SMART ring_2 185 225 IPR001841 -
Lele28g1822 274 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Lele28g1822 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 89 230 - -
Lele28g1822 274 MobiDBLite consensus disorder prediction 234 274 - -
Lele28g1822 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Lele28g1822 274 MobiDBLite consensus disorder prediction 231 274 - -
Lele28g1822 274 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1822 Lele-ChrLele28 21360923 21361747 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1822 110 252 C3H Transcription Factor Family AT1G68180 34.965 2.81e-23 93.6