Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1815 ATGGCATACGTGCCTGACTTTTTTGATGCCATGCATGCCTTTATGGCACATAGAGCTCCCGAACCAAGATTTGGGGTTATAAATGCTTTTGACAATTTAATGAGGCAGACAATAGCTGGGCAATGCCCCAACTTTGATCTTAGACAAAGGTCTATTGATTTCTGTGGTTTATTGATAGCCCCGGGACTGGAAGCACTTATTCAACAGCTCACCATGAATGATCATAGAGGTCATCCTCCAGCGTCACATTCTTCAATTGATGCAAGGCCTACCATTAAGATCACACCAGCACATCTTCGCTCTGATTCACACTGTCCAGTTTGTCAAGAAAAATTCCAGCTAGGCTCCCAGGCTAGGAAAATGCCCTGTAACCATATTTATCATTCTGATTGTATTGTTCCTTGGTTGGTTCAGCATAACTCTTGTCCTGTTTGCCGCGTTGAGATTCCACCACCAGGACAGAGCAGTTCCCGTGATGGAACTCATGGAGGAAGGAATGCCAGTAGCAGCGGTAACCGTCATGATAGCTCAAGGAGGCAGAACCAAGGAGGGAGAAATCCACTATCTGCTTGGTGGCCATCCTGA 585 0.4598 MAYVPDFFDAMHAFMAHRAPEPRFGVINAFDNLMRQTIAGQCPNFDLRQRSIDFCGLLIAPGLEALIQQLTMNDHRGHPPASHSSIDARPTIKITPAHLRSDSHCPVCQEKFQLGSQARKMPCNHIYHSDCIVPWLVQHNSCPVCRVEIPPPGQSSSRDGTHGGRNASSSGNRHDSSRRQNQGGRNPLSAWWPS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1815 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 153 IPR013083 -
Lele28g1815 194 MobiDBLite consensus disorder prediction 154 188 - -
Lele28g1815 194 SMART ring_2 105 145 IPR001841 -
Lele28g1815 194 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 62 150 - -
Lele28g1815 194 SUPERFAMILY RING/U-box 85 152 - -
Lele28g1815 194 FunFam E3 ubiquitin-protein ligase RING1-like 68 152 - -
Lele28g1815 194 MobiDBLite consensus disorder prediction 151 194 - -
Lele28g1815 194 ProSiteProfiles Zinc finger RING-type profile. 105 146 IPR001841 -
Lele28g1815 194 CDD RING-H2_RNF126_like 105 146 - -
Lele28g1815 194 Pfam Ring finger domain 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1815 Lele-ChrLele28 21069820 21070491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1815 26 167 C3H Transcription Factor Family AT5G01980 34.028 1.11e-22 92.8