Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele28g1813 | ATGGCCGTCACCTTCTCGGATCTCCACGCAGAATCGGGACTTAAGTCCCTCAATGAATTCCTCTCTGGCAAGACCTACATTTCTGGGGATCAATTGACTAAGGATGACATTAAAGTCTACGCCTTTGTTAACCCAACCGCCGCTTTTCCTAATGCCAGCAAGTGGTACGATGCCGTCTCTTCACGTCTTGATGAATGCTTCCCTGGAAAAGCTCAAGGGGTGAGATTCAGTGGCCAGGCTGCTCAAGCTGAAGCTGCTCCTGCCAAGGCGGCTGCTGCTGATGACGATGATGACCTTGACCTCTTCGGTGATGAGACAGAGGAGGAAAAGGCAGCTGCAGAGGCAAGGGAGGCTACTAAAAAGGAATCCTCGAAGAAGAAAGAGAGTGGGAAGTCCTCTGTTCTGCTTGATGTGAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTTGAAGAGGCTGTTCGCTCCGTCCAGATGCCCGGGCTTCTGTGGGGAGCATCTAAACTGGTTCCTGTGGGTTACGGTATTAAGAAGATGCAGATAATGATGACCATTGTCGATGACCTTGTCTCTGTGGATTCCCTTATTGAGGAACATCTCACAGTTGAGCCATGCAATGAGTATGTTCAAAGTTGTGACATTGTTGCGTTCAACAAAATCTAA | 663 | 0.4887 | MAVTFSDLHAESGLKSLNEFLSGKTYISGDQLTKDDIKVYAFVNPTAAFPNASKWYDAVSSRLDECFPGKAQGVRFSGQAAQAEAAPAKAAAADDDDDLDLFGDETEEEKAAAEAREATKKESSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMPGLLWGASKLVPVGYGIKKMQIMMTIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI | 220 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele28g1813 | 220 | MobiDBLite | consensus disorder prediction | 107 | 131 | - | - | |
| Lele28g1813 | 220 | CDD | EF1B | 134 | 220 | IPR014038 | GO:0003746|GO:0006414 | |
| Lele28g1813 | 220 | Pfam | EF-1 guanine nucleotide exchange domain | 133 | 220 | IPR014038 | GO:0003746|GO:0006414 | |
| Lele28g1813 | 220 | SMART | EF1_GNE_2 | 131 | 220 | IPR014038 | GO:0003746|GO:0006414 | |
| Lele28g1813 | 220 | Gene3D | - | 4 | 65 | - | - | |
| Lele28g1813 | 220 | Gene3D | - | 124 | 220 | IPR014717 | - | |
| Lele28g1813 | 220 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 95 | 103 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
| Lele28g1813 | 220 | SUPERFAMILY | eEF-1beta-like | 128 | 220 | IPR036219 | - | |
| Lele28g1813 | 220 | PANTHER | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER | 8 | 220 | - | - | |
| Lele28g1813 | 220 | FunFam | Elongation factor 1-beta 1 like | 125 | 220 | - | - | |
| Lele28g1813 | 220 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 2. | 209 | 220 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
| Lele28g1813 | 220 | SUPERFAMILY | GST C-terminal domain-like | 10 | 63 | IPR036282 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele28g1813 | Lele-ChrLele28 | 21058170 | 21059933 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele28g1813 | 1 | 220 | Eukaryotic Initiation Factors Gene Family | AT5G12110 | 73.246 | 4.19e-106 | 303 |