Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1811 ATGAGGGGAAAACCGTTTTCGTCTTCCTCGGAGCTCCACGAAGCAAAATCCAAGATCAAAACTAATGGAGCTCCAGGTTCAGCTTCAGGTTCTTCGGTTCGAGTTTGTGATTTCTGTGGGAAACAGTTCAGTTCTGGAAAAGCCCTAGGAGGTCACAGAAGATATCACATTCAAGCTCAGAGAAAAATGGAGGCTCAGCAACGACAAGAAAAGGTCAATAATCGTCTTCATCATCATCATCATGAATATCCTTCAAATAATTATACCCTAAGAATCAATCCCAATAATAATAATATCTCCGAGGATTTCGTCGGCGGCGGCTTCGATAATGATAATCTCATTAAATCGAATGCTGGGGATCTCAATTATTCTTCGAGATCTCCTTCTTTCCGTTGTGTTGTCTGCTACAAGGATTTCCCATCAAAGAAGTCACTTTTCGGCCATATGAGATCTCATCCTGAGAGAGAATGGAGAGGTATGAACCCTCCTTTATTCACTGATAACGCTTTAACTTCTTCTTCAGCTGAACAGTTCAAAGTAGTGGAAGATGATCAATGCCAAGATAACAACAACAATAATAATAATGGATCTTCTTCTTCGACTTTAGAAGAATCCTCAGTAGTGGTTGATCTTTCTTCATCTTGTTCTGGAAGTAGCTGGGTTAAGAAAGATAGAAGAGGAAGAAGAAGCATTGGAGCTGCAGAAGCAGCTCAAACCCTTATGTATATGTATCTCTATGATGATAACTACATTCATCTTCTTCCTCCTCGCGAGCTGCAGCCTCCTCCTGCTGCAGAAGCAGAAGTATTACCAGTGAAACAAAGGAAGAAGCATGTTGGTTCTTCCTCACCTGGGAAAAAACAAAGGTTGGATGATGATTGCAAGGAGAAGTTAGAGGAAGCTGAGAATGAGAATAATACCTGGGACATGAAAGTGATGAGCTTGATGAAAGAGAAGAAGCTTAAGAGGAAGTACAATAAGAAGAAGATCAAGTCAGAAGCAGAAGGAGAATTGCTGATAAGAACTCTGAAGGAACAAATGAAGTCGTCGTCATCATCATCACAAAGCTATGTCTGCAGCATCTGTAATAAATCTTTCTCAAGTTTTCAAGCTTTAGGGGGACACAGATCCAAGCACAACAGAGAGAAGAACATAGTTATAAGCACCAAGTGCAAGGAAGTGGTGGAATTACTAAGAGTAGAAGAAGAAAAAGAAGAAGAAGAAGAGAACAAGGTTTGCATCAATGGAGCTTTGTCAAATGCTGCAGGATTGAGCTGTGAAGAAGAGCTGGAAGAAGGAGGAGGAGGAAGAGCGTCTCTAATTAGTAGTGAAGAGAGATTGGTACTATGTTCGAATGATCATGATGAGAATAACAGCAATGAAGAGGCAAGTCATGAATCTGGAGGTTCGAAAATACTGGATTTTGATCTGAATGTGCCTTATGTTTCTGAAAAGGAAGCAACTGAGATATAA 1473 0.4046 MRGKPFSSSSELHEAKSKIKTNGAPGSASGSSVRVCDFCGKQFSSGKALGGHRRYHIQAQRKMEAQQRQEKVNNRLHHHHHEYPSNNYTLRINPNNNNISEDFVGGGFDNDNLIKSNAGDLNYSSRSPSFRCVVCYKDFPSKKSLFGHMRSHPEREWRGMNPPLFTDNALTSSSAEQFKVVEDDQCQDNNNNNNNGSSSSTLEESSVVVDLSSSCSGSSWVKKDRRGRRSIGAAEAAQTLMYMYLYDDNYIHLLPPRELQPPPAAEAEVLPVKQRKKHVGSSSPGKKQRLDDDCKEKLEEAENENNTWDMKVMSLMKEKKLKRKYNKKKIKSEAEGELLIRTLKEQMKSSSSSSQSYVCSICNKSFSSFQALGGHRSKHNREKNIVISTKCKEVVELLRVEEEKEEEEENKVCINGALSNAAGLSCEEELEEGGGGRASLISSEERLVLCSNDHDENNSNEEASHESGGSKILDFDLNVPYVSEKEATEI 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1811 490 MobiDBLite consensus disorder prediction 183 203 - -
Lele28g1811 490 Gene3D Classic Zinc Finger 337 415 - -
Lele28g1811 490 MobiDBLite consensus disorder prediction 1 30 - -
Lele28g1811 490 Gene3D Classic Zinc Finger 35 152 - -
Lele28g1811 490 Pfam C2H2-type zinc finger 357 381 - -
Lele28g1811 490 Pfam C2H2-type zinc finger 130 154 - -
Lele28g1811 490 Pfam C2H2-type zinc finger 34 56 - -
Lele28g1811 490 SUPERFAMILY beta-beta-alpha zinc fingers 33 59 IPR036236 -
Lele28g1811 490 ProSitePatterns Zinc finger C2H2 type domain signature. 132 152 IPR013087 -
Lele28g1811 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Lele28g1811 490 MobiDBLite consensus disorder prediction 268 302 - -
Lele28g1811 490 SMART c2h2final6 34 56 IPR013087 -
Lele28g1811 490 SMART c2h2final6 357 379 IPR013087 -
Lele28g1811 490 SMART c2h2final6 130 152 IPR013087 -
Lele28g1811 490 Coils Coil 287 318 - -
Lele28g1811 490 ProSitePatterns Zinc finger C2H2 type domain signature. 359 379 IPR013087 -
Lele28g1811 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 130 157 IPR013087 -
Lele28g1811 490 SUPERFAMILY beta-beta-alpha zinc fingers 130 379 IPR036236 -
Lele28g1811 490 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Lele28g1811 490 MobiDBLite consensus disorder prediction 451 471 - -
Lele28g1811 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 357 384 IPR013087 -
Lele28g1811 490 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 17 69 IPR044653 GO:0003700
Lele28g1811 490 MobiDBLite consensus disorder prediction 284 302 - -
Lele28g1811 490 Coils Coil 391 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1811 Lele-ChrLele28 21033407 21034879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1811 35 163 C2H2 Transcription Factor Family AT2G26940 31.008 1.88e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele28g1811 zf-C2H2_6 1.5e-10 CL0361