Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1810 ATGAGTAACATGACGAGTGGTGATGCTCCAAAAATGCCCAGAGTTCGGCGGTCCATGTTTGAAGTTGAAGAAGCGAGTTACAAAGGTAATGTTGAAGAAGAAGTACCTCTGAAGAAAGGCCCTTGGACGGCCGCAGAGGATGTGATTTTAACGGATTATGTGAAAAAACATGGAGAAGGAAATTGGAATGCAGTCCAAAAGCACTCTGGCCTTGCCCGCTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCACTTGAGGCCAGAATTAAAAAAGGGTGCATTTACTGAAGAGGAGGAGCGTCTAATCATTGAGCTTCATGCTAGGATGGGAAACAAATGGGCTCGAATGGCAACAGAGTTGCCTGGACGTACAGATAATGAGATAAAGAATTACTGGAACACTAGAGTTAAGAGAATGCAACGAGCTGGATTACCAATTTATCCTCCTGACATATGCCAGTGGGTACGCAGTCAAGAAAATTTGAATGTGGGTACTTTGATGAGTGGAGCCAGCCAGCACTCTGATATCACACAAGATGGCAACTTCAATGTCCCCCAACTGGACTTCAAAAATTATGATCTCAGTCGGGCTTATCTATCAAATGGTCCATCTGTTTTAGATATTCCTGAAAGCAGCCTGTTTCAGCAAACTTTAGGGCCACCGCATAGTGAGGATTTATTGTTCAGAAACCCTCCGAAACACCTCGGGGATTCAGATATGCTTTATAATAGATTGGACAATTGTAGCGGCTGTATGATACCAGCCTATGATAAGTTTGCAGATTATACTGCTGAGCCACCTCATCTTTTGCCATCTCCAAGCAATCTGTCCTTTGACCCCGATGATCTGTTTTGTGGTGATAATCTTCATGGCAGCCATGCCACTTTAAATGGCACTATCTCTTCTTCAGCGCCCGTACCCGAGGCAATGAAGTTGGAGCTCCCTTCACTCCAATATTTAGAAACTCAACAAGGTAGCTGGGATGCAAATGTATCCCCACTGCCTTCACTGGAGTCTGTCGATACATTGTTTCAGTCTTCTCCAGTTGAACAGTACCAGTCATGTAATGTTACTCCAGATAGTAGTGGTTTGTTAGAATCAATAATCTGTGATAGCAAGCTTCCCAAGGCCTCAAATAATGATTCATTGTGGAAGATTCCTGATGAGTACATACTGAATGTGGCTAAAACAGAGACAGAATGGGACCAACATGGGGACACAAATTCATCCTTAGGTCACTCTTCTGCCTCAGTTCTTACAGATTATACTCCTCCTGTTAGCATCTGCTCAGTTGATGATCCCTACTTCAGTGAACACACGAAAGCAGGTTATGAATTGAGGCAGGAAGCGATTTCACAGGATCCACCTCACGTTTCCAAAAGCAAAAGAACTTCTAGTCAGATAGACATAAGGCCAGATGCTTTGCTTGGCATGTGTTGGTTGGGGAATGATACCCGTTACCGCTAG 1470 0.4415 MSNMTSGDAPKMPRVRRSMFEVEEASYKGNVEEEVPLKKGPWTAAEDVILTDYVKKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPELKKGAFTEEEERLIIELHARMGNKWARMATELPGRTDNEIKNYWNTRVKRMQRAGLPIYPPDICQWVRSQENLNVGTLMSGASQHSDITQDGNFNVPQLDFKNYDLSRAYLSNGPSVLDIPESSLFQQTLGPPHSEDLLFRNPPKHLGDSDMLYNRLDNCSGCMIPAYDKFADYTAEPPHLLPSPSNLSFDPDDLFCGDNLHGSHATLNGTISSSAPVPEAMKLELPSLQYLETQQGSWDANVSPLPSLESVDTLFQSSPVEQYQSCNVTPDSSGLLESIICDSKLPKASNNDSLWKIPDEYILNVAKTETEWDQHGDTNSSLGHSSASVLTDYTPPVSICSVDDPYFSEHTKAGYELRQEAISQDPPHVSKSKRTSSQIDIRPDALLGMCWLGNDTRYR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1810 489 Gene3D - 38 91 - -
Lele28g1810 489 ProSiteProfiles Myb-like domain profile. 34 86 IPR001005 -
Lele28g1810 489 SUPERFAMILY Homeodomain-like 36 133 IPR009057 -
Lele28g1810 489 FunFam Transcription factor GAMYB 94 140 - -
Lele28g1810 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Lele28g1810 489 SMART sant 38 88 IPR001005 -
Lele28g1810 489 SMART sant 91 139 IPR001005 -
Lele28g1810 489 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Lele28g1810 489 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Lele28g1810 489 CDD SANT 41 86 IPR001005 -
Lele28g1810 489 FunFam MYB-related transcription factor 38 91 - -
Lele28g1810 489 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Lele28g1810 489 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 28 485 - -
Lele28g1810 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Lele28g1810 489 Gene3D - 94 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1810 Lele-ChrLele28 21013185 21016875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1810 37 482 MYB Transcription Factor Family AT5G06100 36.152 3.37e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele28g1810 Myb_DNA-binding 1e-13 CL0123