Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1787 ATGGAAAAAGCAAATACAGATGCAGTTGCTGTAGTTCGAAGTGATGGAGATTCCTTGTCAGATCCAGCTCATTATCATCGTCTACAGGTGCTCAAAGCTGGATTGTTTATGATCACGTTTCCTTTGAATTTCTCCCATGTTACTGTTTTTCTGGGTTTGCTTCATTCAGAAGTCAAGAAGGCTGATTACACTGTTAGTAAAATGGGTGGCTTACACTCTTTGTTTGACGAACTAGTTTCGGCAACGTTCCAGACATTCACAGGAAATGAAAAAGCTGATAATTCTTCCTTGCTTCAGCAGTCCAGACGACCAAGCCTCACCTCTTTGCATATACCAGTAAGGTCAGTAGAAAGTTCATTATCATCTTCTGCAAAGACAGATTTTCTATCACTGTCAAGTCCAGGTTCCGCTCGAGGAGGACTGCCTCCAAGACCAAATTCAGCTAGAGTCAGGTCTTCCATGAGAAGTTTACTTCCTCAAAGGAGTTTAAAGGCAAAAAATTGTTCTCCAGATTGTGAAAGGGCGGTTCTCATTGTTTCTGATATTCCCTCATCAGATGGAACTTTGGATAAGCCTTCAACTTCAAGGTCCCTTTCTTTTAATAAGGTTTTGTTCCCTTCATCAACAAAAACATCAAATTCATCACCAGCTATACCAATTGCAAATACAGTTGCAGAGATCACGCTTGGAAGTCATCTAGGAAGTGATCCTGACTTGAGTCGAACAGGTTCTAGTGGTTTGATCCGAGTAATTTCCGCAAGATCACATCCTGCAGCTGTTAATGACCATTCAATTGACAAAGTTTCAGTATCAGAGATAGACATTGAAGATGCTAGTGAGGACATTCCTGAAGAAGAAGCAGTTTGTAGGATTTGTTTAATGGAGCTGGGGGAAGGTGGAGATACCCTTAAGATGGAGTGCATTTGTAGAGGTGACCTTGCGCTTGCTCACCAAGAGTGTGCAGTGAAGTGGTTTAGTATAAAAGGAAACAAGACATGTGATGTTTGCAAGCAGGAGGTCCAAAATCTTCCAGTGACTCTCTTGAAAGTCCTCCTTCTACCGATGGACGGCCATCAAATACCCCACAGGAGACAGAAGTTTCTTTTCACAGGCAAGTTTAAGTGCTTCAATGTGCTAGCTCTTCTTGTGATCTGGCAGGATGTACTCGTACTTGTCTTGGTCAGCATGCTAGCTTATTTTTGCTTTTTAGAGCAACTTCTGGTTTCAGATATGGGTCCTCGTGCCCTGGCCATCTCACTACCTTTTGCCTGCACATTTGGCCTCGTTGCATCTTTGCTTGCTTCAACCATGGCCACAAGGCATCGAAATGAACACAGGATGGATAGAAATTGTGACTTTGGAGCTTTCCATCTGCACCTGCTGTTTTTGAGTTTCAAGGTAGTCACGACAAAATCTAGAAATTGGATGGGATTCATGTATTTTGCAAAAAGGATCAAATGGGATTACATGTGGGCTTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGCTGGCTCATCATAAAGTAAATGGGGTTCTCTCAGTTATGCTCTCTTCACTTGCTGGATTTGGGATTGCAGTGGTCGTAAATTATCTGCTCAAGGATTTTTTAAATTGGAGATTTAGAAAGCAGTTACAATCTATTAATCAGACTACAACAGAGCAGGAACAAGGATGGCATAATAGGCGGCAAAGACAGCAGCAAAGCAACATCAATAACAGTACCTCCGGTAAATAG 1737 0.4208 MEKANTDAVAVVRSDGDSLSDPAHYHRLQVLKAGLFMITFPLNFSHVTVFLGLLHSEVKKADYTVSKMGGLHSLFDELVSATFQTFTGNEKADNSSLLQQSRRPSLTSLHIPVRSVESSLSSSAKTDFLSLSSPGSARGGLPPRPNSARVRSSMRSLLPQRSLKAKNCSPDCERAVLIVSDIPSSDGTLDKPSTSRSLSFNKVLFPSSTKTSNSSPAIPIANTVAEITLGSHLGSDPDLSRTGSSGLIRVISARSHPAAVNDHSIDKVSVSEIDIEDASEDIPEEEAVCRICLMELGEGGDTLKMECICRGDLALAHQECAVKWFSIKGNKTCDVCKQEVQNLPVTLLKVLLLPMDGHQIPHRRQKFLFTGKFKCFNVLALLVIWQDVLVLVLVSMLAYFCFLEQLLVSDMGPRALAISLPFACTFGLVASLLASTMATRHRNEHRMDRNCDFGAFHLHLLFLSFKVVTTKSRNWMGFMYFAKRIKWDYMWAYACFQFAIVILLAHHKVNGVLSVMLSSLAGFGIAVVVNYLLKDFLNWRFRKQLQSINQTTTEQEQGWHNRRQRQQQSNINNSTSGK 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1787 578 Pfam RING-variant domain 289 336 IPR011016 GO:0008270
Lele28g1787 578 SMART ringv_2 288 337 IPR011016 GO:0008270
Lele28g1787 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 344 IPR013083 -
Lele28g1787 578 PANTHER OS02G0165000 PROTEIN 485 557 - -
Lele28g1787 578 CDD RING_CH-C4HC3_MARCH 289 337 - -
Lele28g1787 578 MobiDBLite consensus disorder prediction 552 578 - -
Lele28g1787 578 ProSiteProfiles Zinc finger RING-CH-type profile. 281 343 IPR011016 GO:0008270
Lele28g1787 578 MobiDBLite consensus disorder prediction 131 154 - -
Lele28g1787 578 SUPERFAMILY RING/U-box 285 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1787 Lele-ChrLele28 20744207 20751325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1787 272 343 C3H Transcription Factor Family AT2G37950 43.836 3.08e-13 67.4