Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1760 ATGGAGTTCGTGGGCAAAACTGTTAAGAAGGAGGTCAAGGGGGTTGGGATTGTCTCGGGAACAGTGAAATCTTTCGATTCGTCGTCTGGGTTCGTTGAGATCATTTACGAAGATGGTAATTCTGAGGAGCTTGAATCGTCTGACGTGGCTTCTCTTGTGCAAGGTGAACCGGAGTTAGTAAAGGTGAAGCGCAGGGGAAGGAAACCCAAGAAGAGGCGTCGTGTGGAAAAGAAGCATGACACCAGTGGAAGTCCAGGTAATATCGATGATAATTTGGGTGTTTCCATGCTAAATGATTCTGAATTTAGGGGGGTTTCGGATGAAGGTGTTTCTTCGAGTGGAAATTTCGAAGAAAATGGTGAATTAGATAGTGGGTTGAAGAGAAGCCCGGGTGTGGCAAATGGGGCGGGAGGGAATTCGACTTTGGGAACTGAAAACATGGGGAATTTGAATTGGAGTGCCAGCTCTAACGGGATCAAAGGAGTTCAACTGACGGAAAGCGGGTATGAAGAGAAATCCAAAGAAAGTATATCTACTAACGGTAATTCCAGCATAACGGATTGTGTAAAAGATGGGGTTGATTTGAATGCTAGACTTAACCTGAATGAGGCCCTGGATCTGAATGATGGGTGTAGTTCACATGTTAATACTGAGGATGGTTTGAAGAAAAGGGGCTGTATAGATTTAAATGTGGATGTGAATCATGAAATTGATGCCAGTGCGAACGTCACTGATTTAGGTTGTCCAGCAGCTGATATGTCGAAGCGGCAATGTAATTTTGATTTGAATATGGAGGTATGTGATGAAGCTAAGGAAACTCAGGGTGATACTGCTGGAGATAAACTGTCAGATGGAGGTTGTTTGTTTGGTAAAATGGGGCAAAGCCCTACGACAGAGACAGATATTAATCGAAATTCTGTACAAGATGATAGTGTTAAAAGGAATTTCGATGATATCACTAATTCGATCAAATTGGAGGGAATTGATGGTTTCCACGAGTGTGCAGGTAAAGATGCCTCTGAGAGTTTGATTGAGGAAAAGGAAGATGGAGTTTACAATGGAGGTACTGTGGAAATTGACTCTCTTGGGGTTTCAAACGCTATTTCTGTTAAGGATTGTGATTCTGTGGAGGTTTGGCAGGAGCATAGTCCTTCTGAGGCTGGTATTGCTATAACTCATGGATGTCAAAATGAGCAAGGAAGCCAACATAAACAAGGAAGTGGCCGAAGGAAGAGAAGAAAACTATCAGATAATCTGAAAGCCACTCCAGAGACAGTTTTAAGGAGGAGTTCTCGCCGTGCATCAGCTTTAAAACGTGATTCAAGCCCTGTAACATTGAATGTGATGGATGATCCTTTGATGTCTCCAGGGCCCAGTGCCATAACAGAAGAAAAAGCAATTGTTTCTGGTTCTGATCAGTATGAACAGTGCAGTGAACTTCCGCCAAAGCTGCAACTACCCCCTTCTTCTCAAAATTTGAACTTAGATAACATTCCTGTTCTTGATCTTTTTTCCATTTATGCTTGTTTGAGGTCCTTCAGTACTATATTATTTTTAAGTCCTTTTGAGTTGGAGGATTTTGTAACTGCACTGAAGAGTGTAAATCCTAACATATTATTTGACAACATTCATGTTTCTATTTTACAAACTCTTAGAAAGCACTTGGAATACCTTTCAAATGAGGGTTGCCAATCTGCATCCGATTGCCTGAGAAGTTTGAACTGGGATTTGTTGGACCTGGTCACATGGCCCATTTTTATGGCTGAGTATCTGCTGATTCTTGGTTCTGGACTTAAAACTGGTTTTAATCTGAAGTATCTGATGTTTGGAGGTGACTACTACAAGCAGCCAGTAACTTTGAAGATTGAAATTCTTCAGTGCCTTTGTGATGATATGATGGAAGTGGAAGCCATAAGTTTGGAGCTTAACAGAAGATCTTTGGTGACTGAGGCTGATATGAGTTTTGATCAAAGTATGTATTTTGACATTTGCAAGAAAAGAAGAGCTCTAATGGACATGTCGGGCTTTTCTCCTTCTGAGGAAATTGTTGATGTCACAAATGACTGGAACAGTGATGAATGCTGTCTTTGCAAGATGGATGGAAGTTTAATATGTTGTGATGGTTGCCCTGCTGCATTCCACTCCAGGTGTGTAGGGGTTGCAAATAACCATTTACCTGAAGGTGACTGGTATTGCCCTGAGTGTGCAATTAGCAGACGTAATCCTTGGATTAAACTGCAAAAATCACTTCGAGGGGCAGACCTTTTAGGAATTGATCCTCATGGTCGTCTTTATTTTGATAGCTGTGGTTACCTGTTAGTGTCAGATTCATCTGACATGAGATCCTTGTTCAATTACTACCACATAAATGATCTGCATGTTTTAATTGAAGTCCTAAGAGCGGCTGATGCTTTCTATGGTAGCATATTAATGGCAATCTGCAAGCATTGGGATATTCCTCTTAACTTAAATGCTAGCAGAAACATGCATATGAAGACAGAATGCTCTGCTATATATCCATCCTCAGCACCTTTTTCATCCTCAGAAGCATTCTTGGACAAGAATCAGGCTGCTGATCAAAGAAAGTATGAAGAAACTTCTACCGTACAACCTGTGGGCCAAGAGTTTCTCAAAGGTGAGAGACAGCTAGATTCAGTCATAACAACAGAAAGCCCCTGTGTTGCTTCAGAGGTATCAGCTGATACCACAAAAATGAGGTCAACCACTTATGATGAGACTCTAACACATGGACTCCATGATTCCAATAGATCTGATGGGGCCCTGAATCAGCCAGGAATACCGGAGAAATTGCACCCAGTCGCTCACTCTTCTTTGAGGTCTTCCCGCTTAGATACAAGCCGTAAGGTAAACTTAACATCTGCGGGTATTGGTTATACTGCATCGGCTATGTCCACTGGGAATAGAGCTACTTCAGAAATGCCTTGTGGAATTGACTACATCAACTATTACAGCTTTGCAAGAACAGCTTCATTAGTGGCAGAGGAGTTGGCACGCAAATCGCCTGAAAAGATCAAGAGTATTGAAATGTCTGAAGAAGACTTAATTTCAGAACAAGTGAAGGCTATTATTAAGAAATCTACGAACTTCTACTGGCCAAGTTCTCAAAATATTAATGCAGCTGCCCAAAAGGAAAAATGTGGGTGGTGCTATACGTGCAGAGTGGAAAATGATGACAGAGATTGCTTGTTTAACTCTGTGGTGATGCATGCTCAGGAAGTGTCTAAAAGTGATTTAGTTGGGTTTCAACCAAAGAATCAGAATGCCCATCTTAGAGATGTCATATTTTATATTCTCTCCCTTGAGGAGCGATTACGTGGGCTTCTACTGGGGCCTTGGTTGAGCCTCCATCATTCTAAGAATTGGCGTAACAATCTTCTTAAGGCATCTGATGTTGCATTTATCAAATGCTCATTACTGACTTTAGAGTCCAATTTGCGGCCTCTTGCTCTTTCGGCAGACTGGTGGAAACATGTGGATTCTGTTGTTACCATGGGTTCGGCTTGTCATATAGTGGTCAGTTCACGCACATCTTGGAGGCATAGTATTGGAAGGAAAAGGGCAAGGTGCTCTGATGAGTCCAGTGCATCTTCAAATGCTAGTGGTTTGGGAGCATATTGGTGGAGAGGTGGTCAGCTTTCCCGTCATTTGTTTAATTGGAAGGTTCTGCCAAACTCTCTGCTTACTAAGGCTGCTAGACAAGCTGGGTGTACAAAGATACCTGGCATTCTATATCTCGAGAATTCTGATTTTTCAAAGAGAAGCAAATGTGTTACTTGGAGAGCTGCTGTTGAGACATCAATTAGTGTGGAGCAACTTGCTGTCCAGGTTAGAGAGCTTGATTCAAACATTAGGTGGCATGACATTGAGAATACTCATCCTCTATGTGTGTTGGACAAGGAATCCAGAAAATCAATCAGGCTGTTCAAAAAAGTAATTGTACGCAGGAAGAGCACTGAAAGGGAATCTGTAAAATATCTTCTTGATTTTGGGAAGAGAAGGGCTGTTCCAGATATTGTCAAGAAACATGGTTCTTTGTTGGAAGAACCCTCAAGTGACAGGAAAAAATATTGGCTGGAAGAACCTTATGTTCCCTTGCATCTTATAAAGAATTTTGAGGACAAAAAAATTGCTCGCAAGTCCAGTGAAGTGAAACCGGGAAAAATTTTGGAGAATAGTGGATTTAATAAGGGATCTACCCAAAAGCGGGGGTTTTCATATTTGTTTGCTAGGATGGAAAGGCCTACCTATCATCAGTGTGGCCACTGCAACAAAGATGTTCCAACCAGGGAAGCTGTGAGCTGCCAGCACTGTAATGGATTCTTTCATAAGAGGCATGTCAGAAAATCTGGTGGCACTGCTGAATGCACATATTCATGTCAGAGATGCCTGGATTGGATGCATGCAAATTCTAATTCTAAAAGGAGAAAACTGGAACCAAAACGAGGGAATATTCAATCACAAAAGGGTCGAAAGGCCCCCTCTGTGGGTAGACCAGCTAAGCAAAACGGAAGTAAAAAACCATTGAGTAAGAGGCGGCAAGGAAAATCTCAATCCAATAAAAAGGTCCCACCAAATATACCTCTTCGTCGTTCAGCCAGGAAGGCCAAATGCTTGTACGTGCAAAAGAAAAGGAACGTAGGACGTAAAAAAGGAAAGAAAAGTAAATCCAAGAAGGTGACATCTACTAGGAAGCCCAAGGAAACTACTACTCGTTCTAAGACGGCAGTAACTTTAGAGCGTAAGAAAAGAACTCATGTCTGTAACAGTTACTGGCTTAATGGTCTTAGGTTGTCCACAAAGCCAAATGATGAACGAGTAATGCTGTTTAAGGAGAAAAAGCATCTTGCCCCCTCAGAAAGTTTTTCTAGCACCTTTGATCAACCTAAATGTCATCTTTGTTGTGGAGATGGGTGCACTTTGAATTATATTGCTTGTGAAATCTGTGGAGAGTGGTTTCATGGCGATGCTTTTGGACTCACTCTAGAGAATGTCAGACAACTAATTGGATTTAGGTGTCATGTTTGTCGTGATAGGATCGCTCCAATCTGTCCCCACAAGAATAGTAATGCCTTGACTCATGCTGAAATCAAAGATGCAACTGATTGTGCAGAGCCATTGAGGTTTGATGATTTGTGTGGAAAGGATATATAG 5172 0.4174 MEFVGKTVKKEVKGVGIVSGTVKSFDSSSGFVEIIYEDGNSEELESSDVASLVQGEPELVKVKRRGRKPKKRRRVEKKHDTSGSPGNIDDNLGVSMLNDSEFRGVSDEGVSSSGNFEENGELDSGLKRSPGVANGAGGNSTLGTENMGNLNWSASSNGIKGVQLTESGYEEKSKESISTNGNSSITDCVKDGVDLNARLNLNEALDLNDGCSSHVNTEDGLKKRGCIDLNVDVNHEIDASANVTDLGCPAADMSKRQCNFDLNMEVCDEAKETQGDTAGDKLSDGGCLFGKMGQSPTTETDINRNSVQDDSVKRNFDDITNSIKLEGIDGFHECAGKDASESLIEEKEDGVYNGGTVEIDSLGVSNAISVKDCDSVEVWQEHSPSEAGIAITHGCQNEQGSQHKQGSGRRKRRKLSDNLKATPETVLRRSSRRASALKRDSSPVTLNVMDDPLMSPGPSAITEEKAIVSGSDQYEQCSELPPKLQLPPSSQNLNLDNIPVLDLFSIYACLRSFSTILFLSPFELEDFVTALKSVNPNILFDNIHVSILQTLRKHLEYLSNEGCQSASDCLRSLNWDLLDLVTWPIFMAEYLLILGSGLKTGFNLKYLMFGGDYYKQPVTLKIEILQCLCDDMMEVEAISLELNRRSLVTEADMSFDQSMYFDICKKRRALMDMSGFSPSEEIVDVTNDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGVANNHLPEGDWYCPECAISRRNPWIKLQKSLRGADLLGIDPHGRLYFDSCGYLLVSDSSDMRSLFNYYHINDLHVLIEVLRAADAFYGSILMAICKHWDIPLNLNASRNMHMKTECSAIYPSSAPFSSSEAFLDKNQAADQRKYEETSTVQPVGQEFLKGERQLDSVITTESPCVASEVSADTTKMRSTTYDETLTHGLHDSNRSDGALNQPGIPEKLHPVAHSSLRSSRLDTSRKVNLTSAGIGYTASAMSTGNRATSEMPCGIDYINYYSFARTASLVAEELARKSPEKIKSIEMSEEDLISEQVKAIIKKSTNFYWPSSQNINAAAQKEKCGWCYTCRVENDDRDCLFNSVVMHAQEVSKSDLVGFQPKNQNAHLRDVIFYILSLEERLRGLLLGPWLSLHHSKNWRNNLLKASDVAFIKCSLLTLESNLRPLALSADWWKHVDSVVTMGSACHIVVSSRTSWRHSIGRKRARCSDESSASSNASGLGAYWWRGGQLSRHLFNWKVLPNSLLTKAARQAGCTKIPGILYLENSDFSKRSKCVTWRAAVETSISVEQLAVQVRELDSNIRWHDIENTHPLCVLDKESRKSIRLFKKVIVRRKSTERESVKYLLDFGKRRAVPDIVKKHGSLLEEPSSDRKKYWLEEPYVPLHLIKNFEDKKIARKSSEVKPGKILENSGFNKGSTQKRGFSYLFARMERPTYHQCGHCNKDVPTREAVSCQHCNGFFHKRHVRKSGGTAECTYSCQRCLDWMHANSNSKRRKLEPKRGNIQSQKGRKAPSVGRPAKQNGSKKPLSKRRQGKSQSNKKVPPNIPLRRSARKAKCLYVQKKRNVGRKKGKKSKSKKVTSTRKPKETTTRSKTAVTLERKKRTHVCNSYWLNGLRLSTKPNDERVMLFKEKKHLAPSESFSSTFDQPKCHLCCGDGCTLNYIACEICGEWFHGDAFGLTLENVRQLIGFRCHVCRDRIAPICPHKNSNALTHAEIKDATDCAEPLRFDDLCGKDI 1723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1760 1723 Pfam PHD-finger 694 736 IPR019787 -
Lele28g1760 1723 MobiDBLite consensus disorder prediction 105 119 - -
Lele28g1760 1723 SUPERFAMILY FYVE/PHD zinc finger 1634 1688 IPR011011 -
Lele28g1760 1723 MobiDBLite consensus disorder prediction 1542 1567 - -
Lele28g1760 1723 ProSiteProfiles DDT domain profile. 497 557 IPR018501 -
Lele28g1760 1723 MobiDBLite consensus disorder prediction 917 936 - -
Lele28g1760 1723 MobiDBLite consensus disorder prediction 396 453 - -
Lele28g1760 1723 MobiDBLite consensus disorder prediction 1479 1581 - -
Lele28g1760 1723 ProSitePatterns Zinc finger PHD-type signature. 694 735 IPR019786 -
Lele28g1760 1723 SMART testlast3 497 557 IPR018501 -
Lele28g1760 1723 ProSiteProfiles Zinc finger PHD-type profile. 691 738 IPR019787 -
Lele28g1760 1723 MobiDBLite consensus disorder prediction 134 149 - -
Lele28g1760 1723 SMART PHD_3 693 736 IPR001965 -
Lele28g1760 1723 SMART PHD_3 1425 1470 IPR001965 -
Lele28g1760 1723 SMART PHD_3 1636 1683 IPR001965 -
Lele28g1760 1723 MobiDBLite consensus disorder prediction 60 149 - -
Lele28g1760 1723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 685 750 IPR013083 -
Lele28g1760 1723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1630 1689 IPR013083 -
Lele28g1760 1723 PANTHER PHD FINGER FAMILY PROTEIN 2 1688 - -
Lele28g1760 1723 SUPERFAMILY FYVE/PHD zinc finger 679 738 IPR011011 -
Lele28g1760 1723 CDD PHD2_CHD_II 694 735 - -
Lele28g1760 1723 Pfam DDT domain 500 553 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1760 Lele-ChrLele28 20494161 20506142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1760 1 1695 PHD Transcription Factor Family AT5G12400 40.709 0.0 1129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lele28g1760 DDT 1.1e-11 No_clan