Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1746 ATGCCCCATTACGCGCGTAGCCTGCTTATTATTATTATTTGCCTTGTTTCCGGCCCTACCACGAACAAAACCCAAACGGAGCAGAAGGACAAAACCCAGGGATTGGAGAAAGTTTGGTACTTTGGTTCAACCCTGTGTTCTGAAGCTGGTTTTACAAGCAAGTTTTTCAGATCGCACATAATGAAATACCTATGCAAAGATGAGTTCCTTCTCCATTACACGGAAAAAAACACCCTTCCAAAAGCACAGAGAAGAAGAAGAGGCAAAGAAGAAGGTATCAATGTATCATACATTGGAACATGTCTGTCTGTCCGATATAGATTTATGTTCATTAGGCTTAAACATGTAGACATTATAAAATGTATACTTTGGTATGTTCCATCTTTTATACCCCCTCCTTTGGCAACCAAGGGAAAAGAATCTGAGAAGAAAGAGAAGCCTAAGGAGAAGGAGAAAGGTAAGTCACGGAACATAGATAATTTTATGGAGGAGTTAAAACATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGAACGTGAACATTGGCATGATGGGCGCAACACAGAACATTCTACTATTAGTCGCTTTGATGAACTCCCTGATGATTTTGATCCAAGTGGAAAACTGCCAGGATCATTTGATGATGGTGATCCACAAACTACGAATCTATACGTTGGAAATCTCTCTCCAAAGGTTGATGAAAATTTTCTTCTCCGAACTTTTGGAAGATTTGGGCCCATTGCTAGTGTGAAGATAATGTGGCCTAGGACAGAGGAGGAACGAAGGCGGCAAAGAAACTGTGGCTTTGTTGCTTTCATGAATAGAGCTGATGGGCAGGCTGCTAAAGACGAAATGCAAGGGGTTGTGGTTTATGAGTATGAATTGAAAATTGGGTGGGGTAAGTCTGTTGCTCTCCCATCACAAGCGCTTCCTGCACCTCCGCCAGGGCATATGGCCATCAGGAGTAATGAGGGTGCCACTGTGATCTTGTCTGGTCCATCTGGTCCATCAGGTCCACCAGTAACTTCTGTGCCAAATCAGAACTCTGAACTGGTTCTTACACCTAATGTTCCCGATATAATGGTTACATCTCCTGAAGATGAGCATCTAAGGCATGTGATTGATACCATGGCTTTGTATGTTTTGGACGGAGGATGTGCTTTTGAACAAGCCATTATGGAGAGGGGCCGTGGCAATCCTCTTTTCAATTTCTTGTTTGAGCTTGGCTCCAAGGAGCATACTTACTATGTTTGGAGACTATACTCATTTGCTCAGGGTGACACTCTTCAAAGATGGCGGACAGAACCCTTCATTATGATAACTGGTAGTGGAAGATGGATTCCTCCATCATTGCCCTCTAGAAAAAGTCCAGAACATGAAAACGAGTCTGGCTTCACACATGCTGCAGGAAGAAGCAGGCGCGTGGAACCTGAAAGAACACTGACTGATGCACAAAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAAAGGAGTCAAATAAAAGAAGCTATGGGGTTTGCTTTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTATTGACAGAATCCTTGACACTTAAAGAGACCCCTATTGCAGCTAAAGTTGCAAGGCTCATGCTTGTCTCTGATGTTCTTCATAATAGTAGTGCTCCTGTAAGGAATGCATCTGCGTATCGCACCAAGTTTGAAGCAACATTGCCTGATATAATGGAGAGTTTTAATGACTTATATCGTAGCGTAACAGGACGTATGACTGCTGAGGCCCTAAAGGAACGAGTTCTAAAAGTTCTGCAAGTTTGGGCAGATTGGTTTCTCTTTTCTGATGCTTATGTGAATGGCTTACGAGCCACATTTCTTCGTTCTGGCAACTCTGGTGTTACACTATTTCATTCCATCTGTGGTGATGCACCTGAAATTGAGAAAAATATACATTCTGCAGATACAGTTGATGGCAGCAAGAGCAACCAAGATTCTGCATTGGCAATGGGGCTAGGAGCTGCAACGAAGGAACTAATGTCTCTTCCTCTTGCTGAGCTTGAAAGACGATGTCGACACAATGGTTTGTCACTTGTGGGTGGCAGGGAAATGATGGTTGCACGGTTGCTTAGCCTGGAGGAGGCAGAAAAGCAAAGGGGTTATGAACTAGATGATGAATTGAAATATGCTCAGAACCAAGCAAGTTCTGGGAGGTATTCAAGTAGTTGGAGAGAAACAAGCATTGAGACTGAACCAGTGGGTTTCTCTGGATGGAACCAGTATGGGGAAGATGATTTACACTCACAAGGCAAAGGCTCAGTATCTCTGGCACAAACTTTGCCCATTCCACACCCTGAATTGAAAGCCTTCACAAAAAAAGAAAAGAATGATCCTGTTTTACCAGCTTCTAAATGGGCTCGAGAGGATGATGATAGTGATGATGAACAAAAGGGTCGTAGAAAGGGTTTGGGATTAAGCTACTCCTCTTCTGGTAGTGAGAATGCAGGTGATGATACTATTAAGGCAGATGAGCTGGAGTCTGTTACTGATACAATCATTTCTGCACCGGCTGATAGTGGAATGAATGAAGAGCAGAGGTTGTATATTGCTTCATCTCATTTTTCTGCCCTATTTTATAATTCCAGCAGTAGATATGTTGTCTTTGGAATTGTGCACATTTTTCGTAGCGTCTCTATTCTCTTTTTGTTTTCTGATTCTGCAGCTTTGTTCCCTTTCCATTTGCAATCACAGTTTCATCATCCGTTTAATTCTTTTCGTGGTGCAAGAATGTTATTTATTGTTCATCTACCATGGTTGTTATACAGGCAGAAGTTGAGACGCCTAGAAGTTGCTTTAATTGAATACCGGGAATTGATTTCGAGGTTTCTAGTGGATGTGGAAGTTGACAGCAGAACATTTATTTTTATACTCGCAGGAAGAACATCTTTGGAGAGGAGGGACATGTCAAGAAAACGCCACCATAGTCGTAGTCGAAGTCATAGTCCACCACGAAGATCATTGGGCAGAGACAGGGAGAGGGAACATGATGCAGACAGGGACCGAGATAGACAGAGAGATAGAGGAGGTTATGATTTTGATAATGATAGAGGTAGGGACCGGGAGAAAAGTGGAAGCAGAGAGAGGGATGATCATGAAAGGGAGAGAGGCAGAGATAGGGACCGGAAGAGACGGGTGAAATAA 3189 0.4299 MPHYARSLLIIIICLVSGPTTNKTQTEQKDKTQGLEKVWYFGSTLCSEAGFTSKFFRSHIMKYLCKDEFLLHYTEKNTLPKAQRRRRGKEEGINVSYIGTCLSVRYRFMFIRLKHVDIIKCILWYVPSFIPPPLATKGKESEKKEKPKEKEKGKSRNIDNFMEELKHEQEMRERRNQEREHWHDGRNTEHSTISRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSNEGATVILSGPSGPSGPPVTSVPNQNSELVLTPNVPDIMVTSPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPSRKSPEHENESGFTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIAAKVARLMLVSDVLHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSVTGRMTAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVTLFHSICGDAPEIEKNIHSADTVDGSKSNQDSALAMGLGAATKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAQNQASSGRYSSSWRETSIETEPVGFSGWNQYGEDDLHSQGKGSVSLAQTLPIPHPELKAFTKKEKNDPVLPASKWAREDDDSDDEQKGRRKGLGLSYSSSGSENAGDDTIKADELESVTDTIISAPADSGMNEEQRLYIASSHFSALFYNSSSRYVVFGIVHIFRSVSILFLFSDSAALFPFHLQSQFHHPFNSFRGARMLFIVHLPWLLYRQKLRRLEVALIEYRELISRFLVDVEVDSRTFIFILAGRTSLERRDMSRKRHHSRSRSHSPPRRSLGRDREREHDADRDRDRQRDRGGYDFDNDRGRDREKSGSRERDDHERERGRDRDRKRRVK 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1746 1062 ProSiteProfiles SAP motif profile. 675 709 IPR003034 -
Lele28g1746 1062 Pfam CID domain 488 616 IPR006569 -
Lele28g1746 1062 Gene3D - 481 628 IPR008942 -
Lele28g1746 1062 PANTHER RNA PROCESSING PROTEIN LD23810P 125 953 - -
Lele28g1746 1062 MobiDBLite consensus disorder prediction 135 158 - -
Lele28g1746 1062 MobiDBLite consensus disorder prediction 783 817 - -
Lele28g1746 1062 MobiDBLite consensus disorder prediction 783 837 - -
Lele28g1746 1062 Gene3D Surp module 359 428 IPR035967 GO:0003723|GO:0006396
Lele28g1746 1062 SUPERFAMILY RNA-binding domain, RBD 214 313 IPR035979 GO:0003676
Lele28g1746 1062 MobiDBLite consensus disorder prediction 982 1062 - -
Lele28g1746 1062 Coils Coil 486 506 - -
Lele28g1746 1062 SUPERFAMILY Surp module (SWAP domain) 347 428 IPR035967 GO:0003723|GO:0006396
Lele28g1746 1062 SMART rrm1_1 222 298 IPR000504 GO:0003723
Lele28g1746 1062 MobiDBLite consensus disorder prediction 137 158 - -
Lele28g1746 1062 Coils Coil 158 178 - -
Lele28g1746 1062 SMART surpneu2 371 425 IPR000061 GO:0003723|GO:0006396
Lele28g1746 1062 Pfam Surp module 371 423 IPR000061 GO:0003723|GO:0006396
Lele28g1746 1062 Gene3D - 135 304 IPR012677 -
Lele28g1746 1062 ProSiteProfiles CID domain profile. 481 626 IPR006569 -
Lele28g1746 1062 MobiDBLite consensus disorder prediction 455 479 - -
Lele28g1746 1062 CDD RRM_SR140 220 303 IPR035009 -
Lele28g1746 1062 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 295 IPR000504 GO:0003723
Lele28g1746 1062 MobiDBLite consensus disorder prediction 999 1055 - -
Lele28g1746 1062 SMART 558neu5 488 623 IPR006569 -
Lele28g1746 1062 MobiDBLite consensus disorder prediction 450 479 - -
Lele28g1746 1062 ProSiteProfiles SURP motif repeat profile. 373 416 IPR000061 GO:0003723|GO:0006396
Lele28g1746 1062 MobiDBLite consensus disorder prediction 170 189 - -
Lele28g1746 1062 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 302 IPR000504 GO:0003723
Lele28g1746 1062 SUPERFAMILY ENTH/VHS domain 485 624 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1746 Lele-ChrLele28 20364242 20375046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1746 218 298 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.39e-06 49.3