Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1734 ATGGATTTCGACAATGATTGTTGCTTGATCGGCGGGGAGGAGGAGGACGAGGCCTTGTACAGCGACGATGGTAATGATGAGGATGAATACGATTTCATCGACAATACTTCTGATAATTCTGATGTTGCTCCCTCGAATCGTCACCAGGTGCAAAACTATACCGTCTTGAGTGAAAGCGACATTCGTCAACGGCAGGAGGATGAGATTATGAAGATATCCACTGTGCTATCCATTTCAAAGGTTGCAGCTTGTATACTGCTTCGTCACTATAATTGGAATGTTAGTAAAGTACATGATGAATGGTTTGCAGATGAAGAAAAAGTTCGCAGTGCGGTTGGCTTGTTGGAGAAACCTCTTATGGAATATAAAGATTCTAGTGAAGTGACTTGTGGGATCTGTTTTGATACCTATCCTGGTTTTGAGATGCTTGATGCTGGTTGCGGTCATCCTTTTTGTAGATCATGTTGGGAAGGTTATATCAGTGTAGCCATCGGTGGCGGTCCTGGATGTTTGTCGTTGCGGTGTCCTGATCCATCATGTGATGCTGCTGTTGGTGAAGATGTTATCAATTTATTGGCTTCTGATGAGGAGAAGGAGAAGTACGGTACTTATTTTATCTGGTCTTATGTTGAGGACAACAAAAAGACCAAATGGTGCCCTGCTCCTGGATGTGATTTTGCTGTGGACTTTGCTTCCGGTAGTGGAAGCTATGATGTTACGTGCAAGTGCTCATGTAGTTTTTGCTGGAATTGCACTGAAGAAGCACATAGGCCTGTTGATTGTGATACTGTCACCAAATGGATATTGAAGAATAGTGCTGAATCTGAAAATATGAATTGGATATTGGCCAATTCAAAACCTTGTCCAAGCTGCAAACGGCCAATTGAGAAAAACCAAGGTTGTATGCATATGACTTGCACACCACCCTGCAAGTATGAGTTTTGCTGGCTTTGCCTTGGTCCATGGTCTGAGCATGGTGAGACAACAGGTGGTTTTTATGCATGTAATCGTTATGAAGAAGCAAAAGCAGATAAAGAGTTTCAAGAGGCGGAACAACAAAGAGAGATAATCAAGAACTCTCTTGAAAGATATTATCACTATTATGAAAGATGGGCAACCAATCAATCATCCAGACAGAAAGCTCTTGCAGACCTAGAGCAAATGCAAACTGTGCACAGCTATGCTAATCAGTATCTATTGCTGCAGCTTGAGAAGCTCAGTGACTTGCAGTGTCAACCTGAATCACAGCTAAAATTCATCACAGAGGCCTGGTTACAGATCGTTGAATGCAGACGAGTTTTGAAATGGACATATGCCTATGGCTACTATATACCTGACAAGCAGAAGGCTAAGAGAGAGTTTTTTGAATACTTGCAAGGTGAAGCTGAGGCTGGATTGGAACGACTGCATCAGTGCGCTGAGAAGGAACTGGAGATATATCTCACTGAAAAGAATCCAGAAAGAGATTTTAACTGTTTCCGCACTAAACTTTCTGGACTAACCAGTGTGACACGGACCTTCTTTGAGAATTTAGTAAAAGCTTTGGAGAATGGTTTATCAGATGTGACCTCTCACGTTCCAACCAACAGAAATGCAGGCTCAAAGAGCTTAGGAAGAAGCTATAGCGGGAAAAAGGGGAGGGAGGAGCCTGTAACACCCAGATCAAATGATTCTGGAATTGCTGGATGA 1689 0.4269 MDFDNDCCLIGGEEEDEALYSDDGNDEDEYDFIDNTSDNSDVAPSNRHQVQNYTVLSESDIRQRQEDEIMKISTVLSISKVAACILLRHYNWNVSKVHDEWFADEEKVRSAVGLLEKPLMEYKDSSEVTCGICFDTYPGFEMLDAGCGHPFCRSCWEGYISVAIGGGPGCLSLRCPDPSCDAAVGEDVINLLASDEEKEKYGTYFIWSYVEDNKKTKWCPAPGCDFAVDFASGSGSYDVTCKCSCSFCWNCTEEAHRPVDCDTVTKWILKNSAESENMNWILANSKPCPSCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGPWSEHGETTGGFYACNRYEEAKADKEFQEAEQQREIIKNSLERYYHYYERWATNQSSRQKALADLEQMQTVHSYANQYLLLQLEKLSDLQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYIPDKQKAKREFFEYLQGEAEAGLERLHQCAEKELEIYLTEKNPERDFNCFRTKLSGLTSVTRTFFENLVKALENGLSDVTSHVPTNRNAGSKSLGRSYSGKKGREEPVTPRSNDSGIAG 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1734 562 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 47 437 IPR031127 GO:0004842|GO:0016567
Lele28g1734 562 Coils Coil 340 360 - -
Lele28g1734 562 FunFam RBR-type E3 ubiquitin transferase 124 213 - -
Lele28g1734 562 FunFam RBR-type E3 ubiquitin transferase 262 522 - -
Lele28g1734 562 SUPERFAMILY RING/U-box 124 211 - -
Lele28g1734 562 SUPERFAMILY RING/U-box 199 268 - -
Lele28g1734 562 Gene3D - 257 522 - -
Lele28g1734 562 ProSiteProfiles TRIAD supradomain profile. 126 339 IPR044066 -
Lele28g1734 562 ProSiteProfiles Zinc finger RING-type profile. 130 176 IPR001841 -
Lele28g1734 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 209 IPR013083 -
Lele28g1734 562 MobiDBLite consensus disorder prediction 523 562 - -
Lele28g1734 562 SUPERFAMILY RING/U-box 280 328 - -
Lele28g1734 562 SMART ibrneu5 274 335 IPR002867 -
Lele28g1734 562 SMART ibrneu5 199 261 IPR002867 -
Lele28g1734 562 CDD RING-HC_RBR_TRIAD1_like 130 180 - -
Lele28g1734 562 MobiDBLite consensus disorder prediction 523 538 - -
Lele28g1734 562 Pfam IBR domain, a half RING-finger domain 278 326 IPR002867 -
Lele28g1734 562 Pfam IBR domain, a half RING-finger domain 199 261 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1734 Lele-ChrLele28 20196505 20207869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1734 11 543 ARIADNE family AT1G65430 69.794 0.0 769