Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1729 ATGAAGTGGGAAATGGATATTCTCTCATCTTCTTCTGCTCATATGTCCAAACCCACTTGGCTCATTCAAGACGCCATGATGAACACAACAACAACTACTACAGCAAGATGGACTCCATCAGAGAACAAGCTGTTTGAGAATGCTCTCGCAGTGTATGATAAAGACACACCAGATCGGTGGGTGAAAGTTGCAGCAATGATACCAGGGAAGACAGTCGGAGATGTGATTAAGCAGTACAGAGAATTAGAAGAAGATGTTATTAATATAGAAGCTGGATTGATCCCAATTCCAGGTTATAATAATAGCACCACAACAACCTCACAACAATTCACCTTAGATTGGGTTAACTCTTATGGATTTGATTCCTTCAAATCTCATGGTGGAAAAAGATCCTCATCTTCAGGAAGACACCCTGAACAAGAAAGAAAGAAAGGTGTCCCATGGACTGAAGAAGAACACAAACTGTTTCTTCTGGGGTTGAAGAAGTATGGGAAAGGAGATTGGAGGAACATATCGCGAAATTTCGTGGTGACTCGGACGCCGACTCAGGTGGCTAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGGAAAGACAAGAGAAGAGCAAGCATTCATGATATAACTACAGTGAATCTGTCAGAAACCACAAGAACACCTTCTTCTTCCTCCTCTTTAGAAGACAACAAAAATGGACTTAACACAAAACAGGAGGCAAATCCATCAAGTGCTAGTTTAGGTCATCAAGCACATTTTGAATGGAACCAGCAGGCAAATGCAGGAGCTATGGGGTCTAATCCTTTTGGGGCTAATAACTCTTATGGGATGAAAGTGCAGGGCCAAAATAGTAATCTGCAGAGAACTGCTCTTCTTAATAATCATGATTCTGCTGCTTCTTACTTTGGATCACCTCAAAGTCATCAGAACATGGTTTTCCAAATGCATTCTTCTTCTGCCCACTACTTTTCTCATGCTTGA 984 0.4167 MKWEMDILSSSSAHMSKPTWLIQDAMMNTTTTTTARWTPSENKLFENALAVYDKDTPDRWVKVAAMIPGKTVGDVIKQYRELEEDVINIEAGLIPIPGYNNSTTTTSQQFTLDWVNSYGFDSFKSHGGKRSSSSGRHPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSETTRTPSSSSSLEDNKNGLNTKQEANPSSASLGHQAHFEWNQQANAGAMGSNPFGANNSYGMKVQGQNSNLQRTALLNNHDSAASYFGSPQSHQNMVFQMHSSSAHYFSHA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1729 327 SUPERFAMILY Homeodomain-like 36 91 IPR009057 -
Lele28g1729 327 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 34 288 IPR043363 -
Lele28g1729 327 Gene3D - 28 96 - -
Lele28g1729 327 SUPERFAMILY Homeodomain-like 141 195 IPR009057 -
Lele28g1729 327 MobiDBLite consensus disorder prediction 209 248 - -
Lele28g1729 327 CDD SANT 36 82 IPR001005 -
Lele28g1729 327 ProSiteProfiles SANT domain profile. 148 196 IPR017884 -
Lele28g1729 327 MobiDBLite consensus disorder prediction 203 248 - -
Lele28g1729 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 196 IPR017930 -
Lele28g1729 327 FunFam transcription factor MYB1R1 146 197 - -
Lele28g1729 327 Gene3D - 146 196 - -
Lele28g1729 327 SMART sant 144 194 IPR001005 -
Lele28g1729 327 SMART sant 33 85 IPR001005 -
Lele28g1729 327 Pfam Myb-like DNA-binding domain 147 192 IPR001005 -
Lele28g1729 327 ProSiteProfiles Myb-like domain profile. 140 192 IPR001005 -
Lele28g1729 327 CDD SANT 147 192 IPR001005 -
Lele28g1729 327 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 143 195 IPR006447 GO:0003677
Lele28g1729 327 FunFam Transcription factor SRM1 29 96 - -
Lele28g1729 327 MobiDBLite consensus disorder prediction 132 147 - -
Lele28g1729 327 MobiDBLite consensus disorder prediction 126 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1729 Lele-ChrLele28 20138358 20139522 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele28g1729 Myb_DNA-binding 1.6e-12 CL0123