Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1703 ATGACGTCAGCGAATCTCTCTGCGCCGGTGGCTTCTGCCGTACAATCAATCCACTGTTCATTGACTGATCTCTGTGACCAGGAACACCATTACTCATTCGAGAACCCCCGACGGTTCTCGGGCTTGGCCCGGCGACTTCAGATTGTCGTCAACCAGTTGCTCCTGTCGTTTCAATCACCGTCGCCGGAGACCTTCCCGTTGTCGGTTCAGACCTCCCTGAAAGGAATGTCCGGCGATCTGTCCAAGGCTGCGGAAGTTGTTTCCGTTTATGAGAAAAGCAGCAAGATATTCGTCTTGATCAACTGCAAGTCCCTCTACTTATCCCTTCAGGAGCACAGTTTCTCCATAGGAGGATGGCTCGCCTTGCTCGATGAGGCTCTTCAAGATGACCCTGACCTCCAAAAGAAAGCTTCTGATCTTTCCAGAGACATGAAGCTCGCTCAGTTCAGAGTTACAGAGGTCGAAGAGAGAGTTCAATGTACGCTGGAAAAAGAAGGGGTAGGAAGACCAACGACCAAGGCAGTACAGAGTGCTATTGTCATGGATTTGGCTCGGGCTTTGGGGATTGACCCAGGTGATCATACAGAGTTATCCAACGAAATAAAGCTGTTCAAGAATGACCTATTGCGCTTAAATTCTGTATCAGAGCGGCGGATTTTAGCTTCCCTTGAAAGGATTTTGAATAACTGGTCAATTGAACCTGACATTGAGACTCGAAAATTGGACTTCGACCTAGAAGACGATTCAGCGATTTCTCCCTTCAAAAATTTTCTTTGCCCATTGACCAAGAAAGTGATGAAGAATCCTGTGGTTCTGGAAACTTTCCAGACCTATGAACGGACTGCTATAGAGTACTGGTTCGAGAGGTGTATTCAAGATGCTCGTCACCCAACTTGTCCTGTAACTGGTAATGTTCTCAAATCCTTGGAACTGAAACCCAATATTGGATTGTCAGGGGCAATAGAAGAGTGGATTAACAGGGTTGTCGAGTATCAAGTCAAATCTGCTGCTGAGCACTTGATTGAGGATCCACTTTGTATAGATCATGTTGAGCAAGCTTTGGACAACATTTATAGGATTTCAGAAGAGAATCCTGCTTGCAGATATGTAATCAGGAATGCTGAAATTGTACAACTGATAATGAAGCTTCTTACTAATAGCTCAAAAATAATTGGATCACGGTTGAGAAGTAAAGCTTTGATGGCTTTAGTTAGTATGGCTACAGATGAAGAAAGCAAGAAAATAATGCTTGAAGGGAGTATCACAAGATTGGCTGTACATAGTCTTACTGGTAGCTCAGAAAAAGAGAGGGAGTATGCTGTGAAGTTATTACTGGAGTTCTCCGGCGATGAAGCTTATTGCATAGGAGTCGCATCAGAGAAAGGTGCATTGGTTCTCCTTACAAGTATGGCAGGAAATCTAGAATTTCCTGCTTTGTCCAAGTTAGCTGAGGAAGTCTTAAGGCAGTTGGAGAGGGTGGAGGATAATGTCCAACGTTTAGCAGCATCTGGAAGATTTGAACCTTTAATTTCACGGCTGCATGGGGGTCCTGATTCTGTGAAGATAGAGATGGCGTCTCTGCTCGGAAGGATGACCTTGACAAACAACAATAAAGAGCAAATTGCCAGGCAAAGTGCTGGTGTACTTGTTGACCTGTTGTCGAAGCCAGAAGGAAGAGAACCAAGCCTGCAAGCATTATATAACTTGTCAGGATTGGATGACAACGCAACCATCCTCGTCAAGTCTCCAGTCTTTCCATCTCTTGTTGATGTTCTTTTTGATGACCAGGAACCTTCAGATGAAATCAAAACATTATCTGCTTCAACAATTGCAAATATAGTATCAAAGCCAGGGCGATGGGAATTAGCATCTGCTGACATGAAGGGGAATTCAATGCAGTCAGAAAATATAGTTTTCAGATTTCTGCAACTTTTAAATTCAGTATCATCTCAATGTCAAGTATATGTTCTTCGCATTCTCTATGGAATAACCTCATCCCCACAGGCATCAGAGTCAGTGGCTTTGCATATAAAATCTAGGGATGGCTTCAAAACGGTCACACAATTTCTTGAAAACCCAGAAGTCGAACTCAGAATATATGCTTTGAAGCTTTTGAGACTACTATCTGAACTGTTCAGTCAAGATCTAGGAAATGAACTGAGACTTTCCAACAAGCTCACAATACTCAAAGAAAAAATGTTAGATGATCAATCTGCAGAGGAAGAGAGAGCAACAGCCGCGTGTATACTTGCCAACCTTTCCTTAACAGAGAAAGAAGTAAAATCACTTTTAGGAGGTGATTTTATTAAATGGATCGTTACCACTCTCAAGAACCAGAGGCGCAGCTCAAATGCAAGTATTTCACAGACTTCACTAAGCTTGCTGGAAGGTCTTCTCGGTCTGTTACTTCACTTCACTAGGAACCTCGATGACCAAACTCTTAACGTTGTCAGAGAAAACCATCTCATGACCATTTTCTGTGAACAGCTGGAATATACTTCCAAACCGAAGGTAAAAAGACTCGCTGCTCTCGGATTAAAAAGCTTATCAGAAACTGGAAGGAGATTTATTTCTAGGGACAATGATCTCTCACCTTCTAATGGGTTCTGTTCTCCCTTCTTGTTCATTTGTGGGAGGAACTCTAATCGGAACCTTTCATGTCCGATTCACGACAGTCCCTGCGAGGAAGAAAGTCAGTTGTGCCTGCTAATGAGCAACTGTATAAAGTCTCTAACTGATCTCCTCAATGACAACAATGAAACTAGTGTTCAAGTTGCTGCAGTGGAGGCACTTTCAACACTAGTATTGGATTATCCACCGAATACATTAAAGAGAGCAGCCGATGAACTCGAGCAATTGGGTGTGATTGATTCTGTGATCAATCTTTTCACAGAGGCTAGATCTGGGGAGCTTCAAGAGAAGACAGTTTGGATTATAGAGAAAATATTGAGAGTGGAAAATCACATTCCTAAGCACTCGCTTAATCAGTCTCTTGTGAGGGGCTTGGTTGAAGCCTTTAAGCATGGGAATCCCAACACCAAGTTGCTTGCTCAGCATGCTTTAACCTGCCTAAAGCAAATATCATTTCTAAGTGAGAAGATATCTAGTGAACCTAGAGCTAGAAGGTAG 3129 0.4302 MTSANLSAPVASAVQSIHCSLTDLCDQEHHYSFENPRRFSGLARRLQIVVNQLLLSFQSPSPETFPLSVQTSLKGMSGDLSKAAEVVSVYEKSSKIFVLINCKSLYLSLQEHSFSIGGWLALLDEALQDDPDLQKKASDLSRDMKLAQFRVTEVEERVQCTLEKEGVGRPTTKAVQSAIVMDLARALGIDPGDHTELSNEIKLFKNDLLRLNSVSERRILASLERILNNWSIEPDIETRKLDFDLEDDSAISPFKNFLCPLTKKVMKNPVVLETFQTYERTAIEYWFERCIQDARHPTCPVTGNVLKSLELKPNIGLSGAIEEWINRVVEYQVKSAAEHLIEDPLCIDHVEQALDNIYRISEENPACRYVIRNAEIVQLIMKLLTNSSKIIGSRLRSKALMALVSMATDEESKKIMLEGSITRLAVHSLTGSSEKEREYAVKLLLEFSGDEAYCIGVASEKGALVLLTSMAGNLEFPALSKLAEEVLRQLERVEDNVQRLAASGRFEPLISRLHGGPDSVKIEMASLLGRMTLTNNNKEQIARQSAGVLVDLLSKPEGREPSLQALYNLSGLDDNATILVKSPVFPSLVDVLFDDQEPSDEIKTLSASTIANIVSKPGRWELASADMKGNSMQSENIVFRFLQLLNSVSSQCQVYVLRILYGITSSPQASESVALHIKSRDGFKTVTQFLENPEVELRIYALKLLRLLSELFSQDLGNELRLSNKLTILKEKMLDDQSAEEERATAACILANLSLTEKEVKSLLGGDFIKWIVTTLKNQRRSSNASISQTSLSLLEGLLGLLLHFTRNLDDQTLNVVRENHLMTIFCEQLEYTSKPKVKRLAALGLKSLSETGRRFISRDNDLSPSNGFCSPFLFICGRNSNRNLSCPIHDSPCEEESQLCLLMSNCIKSLTDLLNDNNETSVQVAAVEALSTLVLDYPPNTLKRAADELEQLGVIDSVINLFTEARSGELQEKTVWIIEKILRVENHIPKHSLNQSLVRGLVEAFKHGNPNTKLLAQHALTCLKQISFLSEKISSEPRARR 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1703 1042 SMART arm_5 894 936 IPR000225 GO:0005515
Lele28g1703 1042 SMART arm_5 572 615 IPR000225 GO:0005515
Lele28g1703 1042 SMART arm_5 364 408 IPR000225 GO:0005515
Lele28g1703 1042 SMART arm_5 534 571 IPR000225 GO:0005515
Lele28g1703 1042 SMART arm_5 942 984 IPR000225 GO:0005515
Lele28g1703 1042 SMART arm_5 670 710 IPR000225 GO:0005515
Lele28g1703 1042 SMART arm_5 809 851 IPR000225 GO:0005515
Lele28g1703 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 340 IPR013083 -
Lele28g1703 1042 SUPERFAMILY ARM repeat 641 1024 IPR016024 -
Lele28g1703 1042 SUPERFAMILY RING/U-box 247 327 - -
Lele28g1703 1042 Gene3D - 341 854 IPR011989 -
Lele28g1703 1042 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Lele28g1703 1042 CDD RING-Ubox_PUB 257 303 IPR045210 -
Lele28g1703 1042 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 28 1032 - -
Lele28g1703 1042 Gene3D - 894 1039 IPR011989 -
Lele28g1703 1042 SMART Ubox_2 256 324 IPR003613 GO:0004842|GO:0016567
Lele28g1703 1042 Coils Coil 483 503 - -
Lele28g1703 1042 ProSiteProfiles U-box domain profile. 252 331 IPR003613 GO:0004842|GO:0016567
Lele28g1703 1042 SUPERFAMILY ARM repeat 343 668 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1703 Lele-ChrLele28 19944247 19949212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1703 254 1031 U-box Gene Family AT1G20780 30.489 1.18e-90 306