Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1698 ATGTCAGACAGGAAACGGCATGTATACAGTTATCTGATGCATGATATGATTTGAGCACAACCCACCACTTTTGGAATTCATGGAGTCAAAGAACGTGCCATTTTTCTTCTTGAAGTTCACCACGCTCAGGAAATTCGCAGGAAGTTGCTTCTTAACTTGATGTTGTCTGATGTGCCAGACATTTCAGAAGAGGAAAAGAACAGGCTTTTGCACTGTGTGGTTGTGGGAGGTGGTCCCACTGGAGTTGAATTCAGTGGCGAACTTAGTGATTGTAACATGAGAGATGTCCGTCAAAGATATGCCCATGTGAAGGATTACATCCATGTTACTTTAATTGAGGCAAACGAGATATTGTCTTCCTTTGATGTCCGTCTCAGGAATTATGCTACCAATCAGTTGACGAAGACAGCTACTAGTAAACATGTTTCCATTTGTATTATATCAGGAGTCCGTCTTGTTCTTGGTACTGTGAAAGACGTTCAAGATCAGAATATTATCCTTAATGATGGCACTGAGGTTCCATATGGTTTGCTGGTATGGTCAACTGGTGTAGGTCCATCACCTCTTGTTCATGCTTTAGATCTTCCCAAAGCTTCTGGTGGAGGAAGGATTGGTGTTGACGAGTGGCTTCGTGTTCCTTCAGTACAGGACATTTTCTCAATAGGCGACTGCAGTGGATTTGTCGAAAGTATAGGAAGACAAACACTTCCAGCTTTGGCCCAAAGAGGCAGGGGAAAATACTTACAAAACGTGCTAAACAAAATTGGGAAAGCAGGAAGAGGCCAAGCAAACAGTGGAAAAGACATTGATTTAGGAGAACCATTTGTCTACAAGCGCCTTGGAAGCATGGCATCTGTTGGCAGCTACAGGGCTCTAGTGGACCTTGGACAGATCAAGGCTTGTCAAGTAGTTTTGAGAAGGGCAAATGCTGCTGGCACTGATATCATAGTGCAGACGAGCATAGAAGCAATGAAAATACGGCTGGGTTTTTTTTTTTGGTACAAAAAGACGCCTGGGTTGATTTCACCATGTAACTGGGGTTTCGAAGGCAGGAGGAACACATTGGTGCTAGACATAACGTGTTCAACAGCAAAGGCAAATCATGACGGAGGCAAAACGATGGTGACAGAGATCCCATTGGCAATTGAACGGGGGGCGAAGAGCAACGATGGCCGAGATCGTGATGGCAGGAGGAAGAACAATAAACAGGTCGGATATAACTACAAAGATGAAAACCTTACAGCATGA 1248 0.4399 MSDRKRHVYSYLMHDMIXAQPTTFGIHGVKERAIFLLEVHHAQEIRRKLLLNLMLSDVPDISEEEKNRLLHCVVVGGGPTGVEFSGELSDCNMRDVRQRYAHVKDYIHVTLIEANEILSSFDVRLRNYATNQLTKTATSKHVSICIISGVRLVLGTVKDVQDQNIILNDGTEVPYGLLVWSTGVGPSPLVHALDLPKASGGGRIGVDEWLRVPSVQDIFSIGDCSGFVESIGRQTLPALAQRGRGKYLQNVLNKIGKAGRGQANSGKDIDLGEPFVYKRLGSMASVGSYRALVDLGQIKACQVVLRRANAAGTDIIVQTSIEAMKIRLGFFFWYKKTPGLISPCNWGFEGRRNTLVLDITCSTAKANHDGGKTMVTEIPLAIERGAKSNDGRDRDGRRKNNKQVGYNYKDENLTA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1698 415 Pfam Pyridine nucleotide-disulphide oxidoreductase 19 242 IPR023753 GO:0016491
Lele28g1698 415 PANTHER NADH DEHYDROGENASE 19 324 IPR045024 GO:0003954|GO:0006116
Lele28g1698 415 SUPERFAMILY FAD/NAD(P)-binding domain 66 239 IPR036188 -
Lele28g1698 415 MobiDBLite consensus disorder prediction 386 405 - -
Lele28g1698 415 MobiDBLite consensus disorder prediction 386 415 - -
Lele28g1698 415 Gene3D - 16 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1698 Lele-ChrLele28 19911706 19917379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1698 9 229 EF-hand Containing Proteins AT4G28220 35.874 2.07e-39 145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g1698 28 19911706 19917379 Lele01g1230 01 7438365 7441075 CCT
Lele28g1698 28 19911706 19917379 Lele02g1500 02 19159533 19162202 CCT
Lele28g1698 28 19911706 19917379 Lele03g1242 03 7400510 7404376 CCT
Lele28g1698 28 19911706 19917379 Lele04g1484 04 20012874 20015629 CCT
Lele25g1692 25 24604647 24611650 Lele28g1698 28 19911706 19917379 hybridization
Lele26g1694 26 20471041 20475198 Lele28g1698 28 19911706 19917379 hybridization