Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1689 ATGGTGTTTCTATTTTTTGCTTTGTTGTGCATTCTGGAGCTATGTATTTGTGTTCCTGACTTTGACAAATTTGTGACCTTTGAGCAACTGGGTTACTATGATTTTCTTCTAGTGTTTCATTCATCGAGTGATTTATTTAATACTTGTTCCATTGTCTGTGTTGCATGCTCACTATCAAAGCATGGAGTGAAGTGGGATTATCAGCCAGAAGCACACTACAAAGAAGCAATATCAGTTCCAGGAGATGGTAAGAGTCGGCAATTTGGTTTCATTGGGTTTCGTACAGAGGATGAAGCCAATGAAGCTATAAAATATTTCAATAGATCCTACCTTGACACCTGTAGAATCACTTGTGAGATAGTGGCATGCCTGCCCGTGGCCCGAAAAGTTGGTGATCCAGATATTCCTTGTCCATGGAGTCGACATTCATTGAAGAAAGGGGAAAAAGTAATCCAAGGTGGGAAGGCAGATGCAGAAAATAGAAGTACTGCTAAGGCACAAAGAGGTGGAGAGAATTTGAAGGAGAGCACTGACATTGATGATCCGCAGCTTCAAGAATTCCTCCAGGTTATGCAGCCTTGGGCTAAGTCAAAATTGTGGGCAAATGATACATTATCAGTGTTGGATAATGTTAGTGAGAAGCGAAAGATAGCTGAGAATAAAAGCAAGGATATTTCAGTTCCAAAGCATGATGAGTTACTTCAAAGCGGCTCATCAGATAATGGGTCTTCTGATGGCTCATCAAATGATGGGTCGTCCTCCACTGGCTCATCAGATGATGGGTCCTCAGATGGTCATGAGTCTGAGAAACCAAATAATCTTGTCCATGATGATGCCATTTCAGATATGGAATATTTCAAGAGTCGGGTGACAAAGGAGTGGTCTGATTCTGAAAATAGTGATGATGATGATGATGAAGACCACAATGCTTATGTGAGCAATGATGATGACAACAAAGACGACAATGATAGTCATGGTGATGAAGATGAAAAAAATTGTGATGATAAATCTTTGAAGGCAACTGGAAGAGGTGAAGCTCAAAACTTAGACCTGTCAGGCCAAGAAAATATCTGTAATAAGGATAGTGACCACCACAAAAAGGTTGAAGTGAGAGGCCCTTCTAATTCTTCTGGTGACGAAGTACCTGAGCAAGGGGTCCCTTCATCATGTCTGGAAAATGACAAAGGAGTTTTTGAGTCTTGTCGACTTGAGGAGGAACTTGAAGAACACTTCAGCAAGTTTGGCACTGTCTCACAGGTTCATCTGGTTGTTAATAAAGATACAAAAAGGTCCAAAGGAATAGCATATATTCTTTACACACTTCCAGAATTTGCTGCCAGGGCAATAGAAGAGTTAGACAATTCAATTTTCCAAGGAAGATTACTGCATGTTTTGCCAGCCGTGCAAAGACCTTCAGATAGCAAGGAAAAGAATACCTCAATGGACCAAAGCTCCAGAACTTTTAAGAAGCAGAGAGAGGAAGAGCGGAAAGCAGCTGAAGCTAGTGGAGATACCCGAGCATGGAATAGTCTATTCATGCGCCCTGACACTGTTGTTGAAAACATTGCTCGTAAATATGGTGTAAGCAAAAGTGATTTACTTGACCGAGAAGCTGATGACCTTGCTGTGCGTATGGCTTTGGGAGAAACTCAAGTGATTGCAGAGACAAAAAAGGCCCTTAAAAATGCTGGCGTGAATGTGGAATCTCTGGAGGAATTTGCCAATGGCCAAAAACTTGGTGTGAAAAGAAGCAACCATGTACTTTTAGTGAAGAACTTGCCATATGGTTCCTCAGAAAATGAACTAGCAAAGATGTTTGGGAAATTTGGGAGTTTGGACAAAATAATCCTGCCTCCAACAAAGACATTGGCCTTGGTTGTCTACCTTGAACCGGCTGAAGCTCGGGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTTTAAAGATGCGCCATTGTATTTGGAATGGGCTCCTTCCAATGTACTTCGCCAAAGTATAACATCTGAGAACAATGAAAAGAGTGGTGCAATTGGTGAAAATGAGGCCAAACGGCAGATATTGGAACAACATCTGGAAGGAGTATCAGATATGGACATTGATCAGGACAGAGTTGAGGTGAAGAAGCATTTGAAAAATGGAAAGCAAGTTTCTATGGGATTTGGATTTATTGAATTTGATTCTGTGGAGACTGCTACGAATGTTTGCAGAGATTTACAGGGGACTATTTTGGATGGGCATGCACTTATTTTACAACTGTGTCAAGTCAAGGACAGACAAGTACCAAAAACGGTTGAGAAGGACAAAAGCTCAACAAAATTACTTGTAAAAAATGTAGCTTTTGAGGCAACAGAGAAGGAATTGAGACAGTTGTTCAGCCCATTCGGCCAGATTAAGAGTTTAAGGTTGCCAATGAAGTTTGGAAATCATAGAGGTTTTGCTTTTGTGGAATATGTTACACAGCAAGAGGCACAAAATGCACTTAAAGCTCTTTCAAGCACCCACTTGTATGGCAGGCATCTGGTGTTGGAGAGAGCAAAGGAAGGCGAGAGTTTGGAGGAACTACGGGCTCGAACGGCTGTGCAATTTAGTGTTGAGCAAAATGGATTTCAAAAGTTATCCAAGGAAAGGAAGCACTTGTCAATCTTGGATGAAAGAAATATGAAGTTTGAAAGAATTGCTGAGTAG 2682 0.4116 MVFLFFALLCILELCICVPDFDKFVTFEQLGYYDFLLVFHSSSDLFNTCSIVCVACSLSKHGVKWDYQPEAHYKEAISVPGDGKSRQFGFIGFRTEDEANEAIKYFNRSYLDTCRITCEIVACLPVARKVGDPDIPCPWSRHSLKKGEKVIQGGKADAENRSTAKAQRGGENLKESTDIDDPQLQEFLQVMQPWAKSKLWANDTLSVLDNVSEKRKIAENKSKDISVPKHDELLQSGSSDNGSSDGSSNDGSSSTGSSDDGSSDGHESEKPNNLVHDDAISDMEYFKSRVTKEWSDSENSDDDDDEDHNAYVSNDDDNKDDNDSHGDEDEKNCDDKSLKATGRGEAQNLDLSGQENICNKDSDHHKKVEVRGPSNSSGDEVPEQGVPSSCLENDKGVFESCRLEEELEEHFSKFGTVSQVHLVVNKDTKRSKGIAYILYTLPEFAARAIEELDNSIFQGRLLHVLPAVQRPSDSKEKNTSMDQSSRTFKKQREEERKAAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDLLDREADDLAVRMALGETQVIAETKKALKNAGVNVESLEEFANGQKLGVKRSNHVLLVKNLPYGSSENELAKMFGKFGSLDKIILPPTKTLALVVYLEPAEARAAFRGLAYKRFKDAPLYLEWAPSNVLRQSITSENNEKSGAIGENEAKRQILEQHLEGVSDMDIDQDRVEVKKHLKNGKQVSMGFGFIEFDSVETATNVCRDLQGTILDGHALILQLCQVKDRQVPKTVEKDKSSTKLLVKNVAFEATEKELRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVLERAKEGESLEELRARTAVQFSVEQNGFQKLSKERKHLSILDERNMKFERIAE 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1689 893 MobiDBLite consensus disorder prediction 262 296 - -
Lele28g1689 893 MobiDBLite consensus disorder prediction 357 373 - -
Lele28g1689 893 CDD RRM6_RBM19_RRM5_MRD1 770 844 - -
Lele28g1689 893 CDD RRM3_RBM19_RRM2_MRD1 404 465 - -
Lele28g1689 893 MobiDBLite consensus disorder prediction 219 392 - -
Lele28g1689 893 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 404 469 IPR000504 GO:0003723
Lele28g1689 893 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 712 747 IPR000504 GO:0003723
Lele28g1689 893 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 588 650 IPR000504 GO:0003723
Lele28g1689 893 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 772 839 IPR000504 GO:0003723
Lele28g1689 893 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 404 463 IPR000504 GO:0003723
Lele28g1689 893 MobiDBLite consensus disorder prediction 312 341 - -
Lele28g1689 893 Gene3D - 682 760 IPR012677 -
Lele28g1689 893 SMART rrm1_1 52 119 IPR000504 GO:0003723
Lele28g1689 893 SMART rrm1_1 693 750 IPR000504 GO:0003723
Lele28g1689 893 SMART rrm1_1 587 654 IPR000504 GO:0003723
Lele28g1689 893 SMART rrm1_1 771 842 IPR000504 GO:0003723
Lele28g1689 893 SMART rrm1_1 395 465 IPR000504 GO:0003723
Lele28g1689 893 MobiDBLite consensus disorder prediction 232 261 - -
Lele28g1689 893 Gene3D - 401 500 IPR012677 -
Lele28g1689 893 SUPERFAMILY RNA-binding domain, RBD 584 756 IPR035979 GO:0003676
Lele28g1689 893 MobiDBLite consensus disorder prediction 297 311 - -
Lele28g1689 893 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 770 846 IPR000504 GO:0003723
Lele28g1689 893 SUPERFAMILY RNA-binding domain, RBD 703 847 IPR035979 GO:0003676
Lele28g1689 893 Gene3D - 43 120 IPR012677 -
Lele28g1689 893 MobiDBLite consensus disorder prediction 475 502 - -
Lele28g1689 893 SUPERFAMILY RNA-binding domain, RBD 82 120 IPR035979 GO:0003676
Lele28g1689 893 FunFam Multiple RNA-binding domain-containing protein 1 764 870 - -
Lele28g1689 893 MobiDBLite consensus disorder prediction 470 502 - -
Lele28g1689 893 FunFam Multiple RNA-binding domain-containing protein 1 577 679 - -
Lele28g1689 893 CDD RRM4_RBM19_RRM3_MRD1 586 657 - -
Lele28g1689 893 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 767 851 - -
Lele28g1689 893 MobiDBLite consensus disorder prediction 148 178 - -
Lele28g1689 893 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 586 658 IPR000504 GO:0003723
Lele28g1689 893 SUPERFAMILY RNA-binding domain, RBD 404 485 IPR035979 GO:0003676
Lele28g1689 893 Gene3D - 761 869 IPR012677 -
Lele28g1689 893 Gene3D - 580 681 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1689 Lele-ChrLele28 19803185 19816108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1689 716 866 Eukaryotic Initiation Factors Gene Family AT3G16380 29.870 7.13e-11 63.9