Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1649 ATGCAGGTATACCCTATGGAGATATCGTTGTTAAACGTGCTTGTTAATGGCATATCCTCGTTTTCTAACTCAAAATTTTCCAGAAACTGGAGCTCAGAACCAATCTTTAAGTATTACGAAAAGGAAGAGGAGATACTTAAGTCGCTAAAGCCAATACTTGAAGTCATCACTAATACCGATTTAGCTTCTGATGAAGTGCTTCTGAAGATATTTGAAGAACTGCATCAGGCTGTGCAGGAACTAAGGGAGCTTTACGAGAGTTGGCAACTATTGTGTAGCAAAATTTACATTGTTCTGCAAGTTGAATCCTTGATATCTAAGATCCAAATTTTGGCACTCAACATTTTCAAGCAACTGAAGGCTTCCCATCAATGTCTCCCTAATGAATTAAGTTCTTCACACATAGAGCATGATTTATTCCAGCACTGTGTTGAGAAAATAAAAAAATTGGAACATGAAGAAGAAACATCATCTATCATCAAGGAAGCTATCATGGAACAAGTAGAAGGCTTAGGACCAAGTTCAGAGGTCCTTGAAAAACTTGCTGAGAACTTAGGCCTGAACTCTAATCAAGATCTTCTAATTGAGGCTGTGACACTTGAAAAGTTGAAGGAGAATGAAGAACAGAATGAAAATACCACAGAAGCTGAATATCTCAACCCGATAATTAATCTTGTAACTTGCATGCATGAGAGACTTATAATGCTCAAGGAAGCTCAGATTTCTAGCAAAGTTCCAGTACCTGCAGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGAAAGATCCTGTGATTGTGTCGTCGGGGCAAACCTATGAGCAAACTTTCATTAAGAACTGGATCGATCTCGGGCTTACCATTTGTCCGAAGACGCGTCAGACTTTGGCTCATACCAACCTGATACCAAATTATACTGTAAAAGCATTGATTGCAAATTGGTGTGAATTGAACAATGTCAATCTAGTTGATGATCCTATAATAGTTTCCACAAACTTGAATCATCATTCCAATTCACTTTTGAATGAAAAGTTTCCTCAAGGAACAAAAGGTGAAGGCAATAATAATGCTTCTCAGCCATTGGACAATTCAGGGGATAGTAGAGATTCTTCTGTGGAGGTTAAGCCGAAGTCAGATATAGCTAGTGATTCTGTCTTAAAACCTCAGAGAGAACTCGATTTTTCGCCTCCATCATTAGAGGCAAGTTCTCAAATCTCGAGTATATGGAAGCAGCCATCAAAAAATTTAAGGTTAACATCTTCTTCACCAGTTAGTCCTTCTGGTATTGAAACCCGGGTTCTGAATTTGGCTAAAGACCTGAAGAGCTCTTCAATTGAAACTCAGAGAGAAGCAACATCAGAACTTCGCCTTCTTTCTAAGCACAATATGGAAAATAGAATTGTGATTGCAAATTGTGGAGTGATTAGTTTATTAGTTGACGTACTCAAGTCAACTGATACAAAGGTCCAAGAAAATGCAGTTACAGCACTTCTAAACTTGTCAATCAATGATAATAACAAAATCTCAATTGCAAATGCTGGTGCAATTGATTCTCTAATTCATGTTCTTGAAACAGGGGGTTCTGAAGAAGCCAAGGAGAATTCAGCAGCCACACTTTATAGTTTATCAATGATGGAAGAAAATAGGATTACGATAGGGAGATCAGGGGCAATTAAGCCATTGGTTGATTTACTAGCAAATCGGAGTCCAAGAGGGAAAAAAGATGCTTCCATTGCTTTGTTCAGCCTATCGATATTTCACGAAAACAAGGGTCGAATTGTGCAAGCCGGCGCCGTGAAGCACCTCGTGGAGTTAATGGATCCGGCTGTCGGAATGGTAGACAAGGCGGTGTCTGTTTTAGCAAATCTTGCATCAATTCCTGAAGGAAGAACTGAAATTGGTCATGAAGGTGCTATTCCTATTCTAGTTGATATAATTGAATTAGGTTCTGCAAGAGGCAAGGAAAATGCAGCTGCCACTCTTCTACATATTTGCTCAAATAGTCCCAGTGGGAAGAAACATCTTCATTTAGAGTTGATTGTGTTCTCTAAAGAAAAACCTATTATATGA 2067 0.3875 MQVYPMEISLLNVLVNGISSFSNSKFSRNWSSEPIFKYYEKEEEILKSLKPILEVITNTDLASDEVLLKIFEELHQAVQELRELYESWQLLCSKIYIVLQVESLISKIQILALNIFKQLKASHQCLPNELSSSHIEHDLFQHCVEKIKKLEHEEETSSIIKEAIMEQVEGLGPSSEVLEKLAENLGLNSNQDLLIEAVTLEKLKENEEQNENTTEAEYLNPIINLVTCMHERLIMLKEAQISSKVPVPADFCCPLSLELMKDPVIVSSGQTYEQTFIKNWIDLGLTICPKTRQTLAHTNLIPNYTVKALIANWCELNNVNLVDDPIIVSTNLNHHSNSLLNEKFPQGTKGEGNNNASQPLDNSGDSRDSSVEVKPKSDIASDSVLKPQRELDFSPPSLEASSQISSIWKQPSKNLRLTSSSPVSPSGIETRVLNLAKDLKSSSIETQREATSELRLLSKHNMENRIVIANCGVISLLVDVLKSTDTKVQENAVTALLNLSINDNNKISIANAGAIDSLIHVLETGGSEEAKENSAATLYSLSMMEENRITIGRSGAIKPLVDLLANRSPRGKKDASIALFSLSIFHENKGRIVQAGAVKHLVELMDPAVGMVDKAVSVLANLASIPEGRTEIGHEGAIPILVDIIELGSARGKENAAATLLHICSNSPSGKKHLHLELIVFSKEKPII 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1649 688 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Lele28g1649 688 FunFam RING-type E3 ubiquitin transferase 246 321 - -
Lele28g1649 688 Coils Coil 190 217 - -
Lele28g1649 688 MobiDBLite consensus disorder prediction 339 398 - -
Lele28g1649 688 MobiDBLite consensus disorder prediction 339 366 - -
Lele28g1649 688 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Lele28g1649 688 CDD RING-Ubox_PUB 251 293 IPR045210 -
Lele28g1649 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 323 IPR013083 -
Lele28g1649 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 555 597 IPR000225 GO:0005515
Lele28g1649 688 SMART arm_5 625 665 IPR000225 GO:0005515
Lele28g1649 688 SMART arm_5 502 543 IPR000225 GO:0005515
Lele28g1649 688 SMART arm_5 461 501 IPR000225 GO:0005515
Lele28g1649 688 SMART arm_5 544 584 IPR000225 GO:0005515
Lele28g1649 688 SMART arm_5 585 624 IPR000225 GO:0005515
Lele28g1649 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 596 637 IPR000225 GO:0005515
Lele28g1649 688 Gene3D - 413 677 IPR011989 -
Lele28g1649 688 FunFam RING-type E3 ubiquitin transferase 418 678 - -
Lele28g1649 688 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Lele28g1649 688 Pfam Armadillo/beta-catenin-like repeat 463 500 IPR000225 GO:0005515
Lele28g1649 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 472 514 IPR000225 GO:0005515
Lele28g1649 688 SUPERFAMILY RING/U-box 245 320 - -
Lele28g1649 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 556 IPR000225 GO:0005515
Lele28g1649 688 PANTHER U BOX DOMAIN-CONTAINING 37 666 - -
Lele28g1649 688 SUPERFAMILY ARM repeat 435 674 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1649 Lele-ChrLele28 17371308 17375181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1649 6 668 U-box Gene Family AT5G67340 49.339 0.0 593