Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1626 ATGCGTCCCACAAAAGAATACTTATCGGTCAAAGAAAGGGTTGACAGGTTTTGTAGAAACCAAAATATCTTAGGGTCAACACTGAAGAGAGCAGCCAGCCGGTGGAGGCGATGCTTGAGACCCATCACAAGCATCCGCTTCTCATGCCCACACGTTTCCCCACCTACTTCAGTCTGTAACATCAAGAATAGATTTGGTCAAGTGAGCTGCATTATAAATATGGCCTATTTAGCAACGGCAGACATTTGTGATTCAAATGCAAAACATGTACCAACTGGTGAATTGCGTGTATTGCAACCAATTTTCCAGAGTTATGGTCAAAGGAGAGCATTCTCAGGTCCAATTGTGACACTGAAGGTGTTTGAGGACAATGTGTTGGTGAGGGAACTTCTTGAAACAAAAAGGGAAGGAAGAGTTCTAATGTTTCTGCCTAAAAGCTTGAAGTGTCACAGGCTTATGATGAAGCTCATCACTACTTGGTTGTTAGTTTCTTTCTTTGAGAGATCCTCGGGTTTTCCTCTCTGCTCTGGTCTGCCTCCTCTTCTTCTTCCTCTGCGCTTCCTCTTGTGTCTAGGTGGTCATCCTTTAACTAGCGAGTGGGGTCATCCTAGTCCGAGTCCAAGAACCTTTTTCTCTAAAATGTTAGGTGAAGATAATCTTACAAGACAAATCTCAGAGACTCCTCAAAGTGGTAGAACTGAGGAGTCATTTCTGCAACAAAATCAAGAGCTCATTATGACTGGAAATTTCAACAGAACAGATACAACACCACAAGATGATGCTTCTGGTGGCCAATTAATTGACTCAGCTTCTTTGTCTGAGAATAAGACTAGCTCAAGAGGGAACCTTGTTGAAAGGATAGCTGCTAGAGCTGGATTTAATGCCCCAAGGTTGAATACAGAAAGCATTATTAGATCAGCGGATCCTACGGTGAATTCAGATACTCGATCTGCTTACTTTACCATACCGCCTGGCCTCAGTCCAACCACGCTATTAGAGTCTCCAGTGTTCCTTTCTAATTCACTGGCACAACCGTCTCCAACAACTGGAAAGTTTCCATTTATCTCAAATGGCAACTTCCAGGGTTCGGAACTGAACTCTGGTGCTCCTGAAAAGACTAAAGATAACAACTTTGGTGACATTTATGCATCATCGTTTGCTTTCAAGACTACAACAACAGATTTGGGCTCTTTCTATAATGGTGCTTCTAGAAAAATGAATCTGACGACGCTGCCAGAACAATATCTTACCGCTGAGGTCTCAGCTCCAGACATGACTGATCCTCCCACTCAAAATGATAGTAGAGCATCAGTTGGGGAACCAGCAGATGAAGAGGGAGGTCAAAGAGGAAATGGAGATTCACAGGCTGCTGGTGTTGGGGGCACACTATCTGAAGATGGATATAACTGGCGGAAGTACGGACAGAAACAAGTTAAAGGTAGTGAGTATCCACGAAGCTACTACAAATGTACGCATACAAATTGTACGGTAAAGAAGAAAGTGGAACGATCTCATGAGGGCCACGTAACAGAAATCATCTACAAGGGGAATCACAACCATCCAAAACCGCCCACGAATCGCAGATCTGCGATAGGGTCTGTTAACCCTCTCAGTGACTTGCAAGCAGACGTATCTGAAAGTACTGAACCACGTGGTGGGGGTGATGGTGAACTTGGCTGGGTAAGCACAAGAAGGGGAAATATAGCTAGAAATGGCGATTGGAAGCATGAGAACCTTGAACTGACCTCTTCAGCAGCATCCGTGGGCCCTGTATTCGGCAACCAGTCCACTGATTTGCTGGGTCAGAATGGTACTCAATTCGAATCAGAAGAAGCAGTGGATGCCTCATCAACTTTCTCTAACGATGAAGATGATGATGATAGGGCCACTCATGGAAGCGTATCAGTAGGTTATGATGGAGAAGGGGATGAATCAGAGTCTAAAAGAAGAAAACTGGAATCTTATCCAAATACAGCAGAATTGAGTGGAGCCACTAGAGCTATCCGTGAGCCTAGAGTTGTTGTTCAAACTACCAGCGAAATTGATATCCTTGACGATGGATATCGTTGGCGCAAATACGGACAAAAAGTTGTCAAAGGAAATCCCAATCCCAGGAGTTACTATAAGTGCACCAATGTAGGTTGCAGAGTAAGGAAGCATGTGGAGAGAGCATCACATGACCTGAAATCTGTGATCACTACATATGAAGGCAAGCACAATCATGATGTTCCTGCAGCTCGCAATAGCAATCAAGGCAATTCTGCAGCTTCTAGTGCTGCTACAGTTCAAGCTTCTTCTGTTATTCATAGTCACAGAGCAGAAGCATCCCAAGTTCACAATAGTATTGGGAGACTTGAGAGGCCAGTTTTGGGCATGGGCTCGTTCAACTTAGCTGGAGCTGGGCCTGGGCCTGGGCCTGGCCCTGGCAGGCCACACCTTGGGCCTTCCCCTGGCTTTTCCTTTGGAATTGGAATGAATCAATCAGGCTTCCCCAACCTAGCCGCCATGGCAGCTTTGGGCCCAGCCCATGCCAAACTTCCGGTCATGACCGTTCATCAGTTCTTGCCCAATCAACGTCCACCAAATATGGGCTTCATGTTGCCCAAAGGAGAGCCCAATTTGGAGCCCATTCCAGATCGCGGGCTTAATATGCCTGCTGGTTCATCAGTATACCAAGATATAATGAGTCGGATGCCACTGGGACCTCATATGTAA 2715 0.4545 MRPTKEYLSVKERVDRFCRNQNILGSTLKRAASRWRRCLRPITSIRFSCPHVSPPTSVCNIKNRFGQVSCIINMAYLATADICDSNAKHVPTGELRVLQPIFQSYGQRRAFSGPIVTLKVFEDNVLVRELLETKREGRVLMFLPKSLKCHRLMMKLITTWLLVSFFERSSGFPLCSGLPPLLLPLRFLLCLGGHPLTSEWGHPSPSPRTFFSKMLGEDNLTRQISETPQSGRTEESFLQQNQELIMTGNFNRTDTTPQDDASGGQLIDSASLSENKTSSRGNLVERIAARAGFNAPRLNTESIIRSADPTVNSDTRSAYFTIPPGLSPTTLLESPVFLSNSLAQPSPTTGKFPFISNGNFQGSELNSGAPEKTKDNNFGDIYASSFAFKTTTTDLGSFYNGASRKMNLTTLPEQYLTAEVSAPDMTDPPTQNDSRASVGEPADEEGGQRGNGDSQAAGVGGTLSEDGYNWRKYGQKQVKGSEYPRSYYKCTHTNCTVKKKVERSHEGHVTEIIYKGNHNHPKPPTNRRSAIGSVNPLSDLQADVSESTEPRGGGDGELGWVSTRRGNIARNGDWKHENLELTSSAASVGPVFGNQSTDLLGQNGTQFESEEAVDASSTFSNDEDDDDRATHGSVSVGYDGEGDESESKRRKLESYPNTAELSGATRAIREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNVGCRVRKHVERASHDLKSVITTYEGKHNHDVPAARNSNQGNSAASSAATVQASSVIHSHRAEASQVHNSIGRLERPVLGMGSFNLAGAGPGPGPGPGRPHLGPSPGFSFGIGMNQSGFPNLAAMAALGPAHAKLPVMTVHQFLPNQRPPNMGFMLPKGEPNLEPIPDRGLNMPAGSSVYQDIMSRMPLGPHM 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1626 904 MobiDBLite consensus disorder prediction 796 817 - -
Lele28g1626 904 ProSiteProfiles WRKY domain profile. 459 523 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele28g1626 904 SMART WRKY_cls 684 743 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele28g1626 904 SMART WRKY_cls 464 522 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele28g1626 904 Gene3D WRKY domain 671 737 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele28g1626 904 SUPERFAMILY WRKY DNA-binding domain 463 523 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele28g1626 904 MobiDBLite consensus disorder prediction 250 277 - -
Lele28g1626 904 MobiDBLite consensus disorder prediction 607 658 - -
Lele28g1626 904 Pfam WRKY DNA -binding domain 685 741 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele28g1626 904 Pfam WRKY DNA -binding domain 465 521 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele28g1626 904 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 332 761 IPR044810 GO:0003700
Lele28g1626 904 MobiDBLite consensus disorder prediction 641 655 - -
Lele28g1626 904 SUPERFAMILY RraA-like 77 141 IPR036704 -
Lele28g1626 904 SUPERFAMILY WRKY DNA-binding domain 676 744 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele28g1626 904 MobiDBLite consensus disorder prediction 744 777 - -
Lele28g1626 904 MobiDBLite consensus disorder prediction 542 564 - -
Lele28g1626 904 Gene3D WRKY domain 458 524 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele28g1626 904 Pfam Aldolase/RraA 79 142 IPR005493 -
Lele28g1626 904 ProSiteProfiles WRKY domain profile. 679 744 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele28g1626 904 Gene3D - 76 162 - -
Lele28g1626 904 MobiDBLite consensus disorder prediction 738 781 - -
Lele28g1626 904 MobiDBLite consensus disorder prediction 420 468 - -
Lele28g1626 904 FunFam WRKY transcription factor 454 524 - -
Lele28g1626 904 FunFam WRKY transcription factor 33 671 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1626 Lele-ChrLele28 16644651 16653938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1626 196 899 WRKY Transcription Factor Family AT5G56270 47.170 2.91e-172 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele28g1626 RraA-like 4.7e-06 CL0364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1494 25 11481283 11486975 Lele28g1626 28 16644651 16653938 hybridization
Lele26g1529 26 11507011 11513936 Lele28g1626 28 16644651 16653938 hybridization