LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g1615	ATGCCCGTACAATTTTCCACCGTGAAACGGCCCGCATCTGATCGAAGTACGTCTTTTGAGGTTGAGGATGATCCATTATTATGCAAAACAAGTCGAAGAAGAAGAAACCATCAAAAGATTCTCAGAATCATACTCACAGACCATGATGCTACAGATTCCGACACTTCCAGCGATAAAGATGAAGATAATACTCGGAGACTAGGAAGAGTTAAGAAGCATATCACAGAGATCACTATGAATCTTCCCTCACCATATCAGTCAACTTCCTCTTCTTCTCTTTCTTGTTTCACGAAAAACGATCACCGTACTATCTTGAAGAGACCTAAGAAATGTCCGTCTCGTTGCCACAACAAGTACAGGGGTGTTCGCCAGAGGCCGTGGGGACGGTGGGCCGCTGAGATCCGAGACCCGACACGTCGGAAGAGACTCTGGCTGGGAACCTTTGACACTGCGGAGGAAGCCGCCAGCGAGTACGACAAGGCTGCGATCATACTCAAGGGTGCTAACGCAGTCACGAACTTCCCTAATTCTGGCGTGACGGAAAAAGAAACAAGGCGGGTAACAGGGGACACCCCACCGAGCACCACCGAGGGATTCGCCTCCTCAATTGCGTCTCCGACGTCAGTGCTGGCCTACTACAGTGATTATTCTACGGCAGAATTCGAGGGTTTCTGCTTCGACGACGTGGAGGGTTTCGATATCGGGATGCCGTTGACGGCCATGAACTTGGTGGGGTTCGGTCAGACGAAATCGCCGGAGAGTGAAGAATTTGAAGACTTTGACGTGGACGAGTTCTTGACGTGGCCTAGCTAA	813	0.5006	MPVQFSTVKRPASDRSTSFEVEDDPLLCKTSRRRRNHQKILRIILTDHDATDSDTSSDKDEDNTRRLGRVKKHITEITMNLPSPYQSTSSSSLSCFTKNDHRTILKRPKKCPSRCHNKYRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAASEYDKAAIILKGANAVTNFPNSGVTEKETRRVTGDTPPSTTEGFASSIASPTSVLAYYSDYSTAEFEGFCFDDVEGFDIGMPLTAMNLVGFGQTKSPESEEFEDFDVDEFLTWPS	270

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g1615	270	SUPERFAMILY	DNA-binding domain	118	176	IPR016177	GO:0003677
	Lele28g1615	270	FunFam	Ethylene-responsive transcription factor 2	117	176	-	-
	Lele28g1615	270	PRINTS	Ethylene responsive element binding protein signature	141	157	IPR001471	GO:0003700\|GO:0006355
	Lele28g1615	270	PRINTS	Ethylene responsive element binding protein signature	119	130	IPR001471	GO:0003700\|GO:0006355
	Lele28g1615	270	ProSiteProfiles	AP2/ERF domain profile.	118	175	IPR001471	GO:0003700\|GO:0006355
	Lele28g1615	270	Gene3D	AP2/ERF domain	117	176	IPR036955	GO:0003700\|GO:0006355
	Lele28g1615	270	Pfam	AP2 domain	118	163	IPR001471	GO:0003700\|GO:0006355
	Lele28g1615	270	SMART	rav1_2	118	181	IPR001471	GO:0003700\|GO:0006355
	Lele28g1615	270	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lele28g1615	270	CDD	AP2	118	177	IPR001471	GO:0003700\|GO:0006355
	Lele28g1615	270	PIRSF	PTI6	15	270	IPR017392	GO:0003700
	Lele28g1615	270	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	38	214	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g1615	Lele-ChrLele28	16234874	16235686	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele28g1615	35	212	AP2-EREBP Transcription Factor Family	AT4G27950	43.548	3.34e-35	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele28g1615		AP2	3e-14	CL0081