Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1582 ATGCCCTTAGCTCAAGATCCATTCTACGTTGTGAAGGAAGAAATTCAAGAATCTATTGATAAGTTGCAATCTACTTTTCACCAATGGCAAAGTACTCTTTATGGTGCTGGAGAGCGAGTGAACCTTTCAAAGGAAATGATTGCTAGTTGTGAAAGCATTGAGTGGCAGGTAGATGAATTGGACAAAGCAATTGCTGTGGCAGCTAGAGATCCTTCTTGGTATGGTATTGATGAATCGGAGCTTGAAAATCGGAGGAGATGGACCAGCAGTGCTCGTACCCAGTCTAGAAACGTCATTTGCATTGAAGATTTTCCCCCAGATGCAACTGTTGTAATATACTTTGTGGGCACAGCAAAGAAAACAGTTGAGGCTAGAAAGGGATCAAATATGCGAACCCGTGATAATGTAGAAATGCATCAAGAACTGATGAGGCTCCCCAATTCCCATCAAGCTGAAACATCCGACCAGTATACTGCCCATGATAATGATGATTTCATTTCATCCGAATCAGATAGACAGCTACTCCTAATGAAGCAACAGGATGAGGAGTTGGATGAGCTTAGTGTCAGTGTACAAAGAATTGGAGGTGTTGGGCTCACAATACATGAAGAACTCCTTGCACAGGAAAAGATTATAGATGAACTGGGTGCTGAAATGGACAGTACATCAAATCGTCTCGATTTTGTCCAGAAAAAAGTAGCGATGGTGATGAAAAAGGCTGGTGCGAAGGGCCAGATCATGATGATACTGGCTTTGGTGGCTTTGTTCATTTTCCTTTTTATTTTGGTATTCTTCACCTAG 801 0.4195 MPLAQDPFYVVKEEIQESIDKLQSTFHQWQSTLYGAGERVNLSKEMIASCESIEWQVDELDKAIAVAARDPSWYGIDESELENRRRWTSSARTQSRNVICIEDFPPDATVVIYFVGTAKKTVEARKGSNMRTRDNVEMHQELMRLPNSHQAETSDQYTAHDNDDFISSESDRQLLLMKQQDEELDELSVSVQRIGGVGLTIHEELLAQEKIIDELGAEMDSTSNRLDFVQKKVAMVMKKAGAKGQIMMILALVALFIFLFILVFFT 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1582 266 Pfam SNARE domain 211 262 IPR000727 -
Lele28g1582 266 PANTHER GOLGI SNARE BET1-RELATED 151 263 IPR039897 -
Lele28g1582 266 SUPERFAMILY t-snare proteins 5 94 IPR010989 GO:0016020|GO:0016192
Lele28g1582 266 FunFam Syntaxin 10 3 99 - -
Lele28g1582 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 174 236 IPR000727 -
Lele28g1582 266 FunFam syntaxin-61 isoform X1 177 238 - -
Lele28g1582 266 Gene3D - 4 99 - -
Lele28g1582 266 Gene3D - 181 245 - -
Lele28g1582 266 SUPERFAMILY SNARE fusion complex 173 236 - -
Lele28g1582 266 SMART tSNARE_6 169 236 IPR000727 -
Lele28g1582 266 CDD SNARE_Qc 177 234 - -
Lele28g1582 266 Pfam Syntaxin 6, N-terminal 6 95 IPR015260 GO:0016020|GO:0048193
Lele28g1582 266 Coils Coil 212 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1582 Lele-ChrLele28 14803876 14806814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1582 56 266 SNARE and Associated Proteins AT1G28490 63.981 6.41e-88 258