Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1581 ATGCCTGTAAATTGCCGTTATACAACAAATAAATATACAAAGAAAACGATCGAGGACAAGCGAGCAGTAGAGAAAACGTATGTGTTGATGGCGACCAATACAGCGGAGGACGTAAAACATGAGAGTGAGGCAGTTGGGGCGGTGCCGGATGAGGTGGTTCTGAAGAAAGGTCCGTGGACGGCGGCGGAGGACGCGGTTCTGAAGGAGTATGTGACAAAGCATGGGGAAGGGAACTGGAATTCAGTTCAGAAAGACACAGGACTAGCTCGCTGTGGCAAAAGCTGTAGGCTGAGATGGGTGAACCATTTGCAACCCAATTTGAAAAAGGGTGCTTTCTCTCCCGACGAAGAGAAGCTCATCCTCCAGCTTCATGTCCAGTTTGGTAACAAATGGGCCCGCATGGCTGCTCTTTTACCTGGGCGTACAGACAATGAAATAAAGAATTATTGGAACACGAGAGTAAAGCGGCGTCAACGTCAAGGCCTGCCTCTTTATTCCGATGAACCTGATCGTTCCACCACCTCTCCCAAACCCATGGCTGCCCCCGCTCTGGCTCCTCCTCCAAATGCTACACGCTTGAACTTCCTTCATCACCATCGCTATTATCCTTTGTCTTCTCCTACTCTACCTCCCCATTCTCCTCTATTATCACCACTTGAGCCTAAACCTGCCATTTCTGACCCCATGATTCCTCTTTGTTCCCCTTCTTCTTCTTCTACGTCGTCCCCTCACTCCTTCATCTTCGGCCGTCCCGCTCCACTTCTGGGTAACCCTCTTGGCTTCAAGCGATTCCGTACTTCTTCGGGTCATCCCCTCCGGGTGGCTGCAAATACTTTTGTAACCTCGACGATGCCCCAGTCTGTTGAGTATACTGGAATCGGATCTATGGATCAAGCTAACTCTTTATCTCATATTTATCAAGCTCCGTTGTTTGAGTACGATCGAGTAGCCGTTTTGAACCAATTTGCAAATTCCCCCGCAAAACTTGAGCTCCCTTCAAATCAGTTTTCCAAGCCTAATATTTTACAGCCAGCTGAGAGCAAGTTTAACATGCAAATGAACAATGTTAATAATGGTTTTCTGGGAGATCCTCTCTTTGAAGCTCAAACGGCAATGAAGAAACCAAGTTACCTCTATCCAGATGAAGGAAACGATCTTGACGGACATCGAGGCTTTCATGATTTGCCTCTTAACTCTTCGATCTGGTCTTCAAATGCAGAACTAAAACAGAAGGAAGAAGCACAAGACCTGAGTAAATCCATGACCAACGACCTATCTTCCATGCTTGCCGTAATGCCGTCGACCCCGTCAGTTTCGGATTGGCCAACCGGCAATGCTGCAGAAGTTTCTAATAATAATGTTCAATCTTCTGGTGTCGTCATTCCATACAATAATTTTGAACTTGACAATAAACCCATTGCTTCTTTGTTTCCCAAGACAACCACGACAAATCATAATGACAATTATGGATGTTTCTCTTGGGACGAACTAACAGGTTCGGATAATTTTGTTATGATCAACTACTGTGAAAATTATACTTTTTAA 1545 0.4563 MPVNCRYTTNKYTKKTIEDKRAVEKTYVLMATNTAEDVKHESEAVGAVPDEVVLKKGPWTAAEDAVLKEYVTKHGEGNWNSVQKDTGLARCGKSCRLRWVNHLQPNLKKGAFSPDEEKLILQLHVQFGNKWARMAALLPGRTDNEIKNYWNTRVKRRQRQGLPLYSDEPDRSTTSPKPMAAPALAPPPNATRLNFLHHHRYYPLSSPTLPPHSPLLSPLEPKPAISDPMIPLCSPSSSSTSSPHSFIFGRPAPLLGNPLGFKRFRTSSGHPLRVAANTFVTSTMPQSVEYTGIGSMDQANSLSHIYQAPLFEYDRVAVLNQFANSPAKLELPSNQFSKPNILQPAESKFNMQMNNVNNGFLGDPLFEAQTAMKKPSYLYPDEGNDLDGHRGFHDLPLNSSIWSSNAELKQKEEAQDLSKSMTNDLSSMLAVMPSTPSVSDWPTGNAAEVSNNNVQSSGVVIPYNNFELDNKPIASLFPKTTTTNHNDNYGCFSWDELTGSDNFVMINYCENYTF 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1581 514 Gene3D - 55 108 - -
Lele28g1581 514 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 38 453 - -
Lele28g1581 514 FunFam MYB-related transcription factor 55 108 - -
Lele28g1581 514 FunFam Transcription factor GAMYB 111 157 - -
Lele28g1581 514 CDD SANT 58 103 IPR001005 -
Lele28g1581 514 Gene3D - 111 157 - -
Lele28g1581 514 ProSiteProfiles Myb-like domain profile. 51 103 IPR001005 -
Lele28g1581 514 SMART sant 108 156 IPR001005 -
Lele28g1581 514 SMART sant 55 105 IPR001005 -
Lele28g1581 514 CDD SANT 111 152 IPR001005 -
Lele28g1581 514 Pfam Myb-like DNA-binding domain 109 152 IPR001005 -
Lele28g1581 514 Pfam Myb-like DNA-binding domain 56 103 IPR001005 -
Lele28g1581 514 MobiDBLite consensus disorder prediction 158 186 - -
Lele28g1581 514 SUPERFAMILY Homeodomain-like 55 150 IPR009057 -
Lele28g1581 514 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 158 IPR017930 -
Lele28g1581 514 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 103 IPR017930 -
Lele28g1581 514 ProSiteProfiles Myb-like domain profile. 104 154 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1581 Lele-ChrLele28 14635729 14638687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1581 52 254 MYB Transcription Factor Family AT4G26930 56.098 3.12e-64 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele28g1581 Myb_DNA-binding 4.2e-12 CL0123