Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1579 ATGGGTTGCTGTCTGACGAAACGCAGATATTCAGAGCCTAACTATAATGGTTTCAGATCAGTTGAACCTGATGGAGTTCACCATCAAAAGATTCATGAGCCTTACCAGTTGCCGGCAAAACCCGCCGCAACAACAACGGCGGCGGCAGCACCATGGAAACCGTCGGTTCCAGCTCCTAGTCCAAAACCGATTCATAAGTCAGATACGATTTTGGGAAAGCCATATGAGGATGTGAAACAGTACTATACAATTGGGAAAGAACTTGGTCGAGGTCAATTTGGGGTTACATATCTGTGCACCGAAAATTCAACCGGTGAGCAATATGCTTGCAAGTCGATTTCGAAGAGGAAGCTGACGAGTAAATCAGATAGGGAAGATATTAAGAGGGAGATTCAGATCATGCAGCATTTGAGTGGACAGCCCAACATTGTTGAGTTCAAAGGTGCTTATGAAGATAAGCTTTCAGTTCATTTTGTGATGGAGCTATGTGCAGGTGGTGAGCTCTTTGATCGGATTATTGCAAAGGGTCATTATTGTGAAAGGGCTGCTGCTTCAATCTGCCGACAAATCGTTAATGTTGTTCATATCTGCCATTTCATGGGTGTGATGCACAGGGATCTGAAGCCTGAGAATTTTTTGTTATCCAGTAAGGGTGAAAATGCAACCCTCAAAGCTACAGATTTTGGCCTATCCGTTTTCATTGAACAAGGAAAGGTTTATCGGAATATAGTTGGGAGTGCTTACTATGTTGCGCCAGAAGTTCTACGCCGCTCATATGGGAAGGAAATAGATGTATGGAGTGCAGGTGTAATGTTGTATATCTTACTTAGTGGTGTACCTCCATTTTGGGCAGAAAAGGAAAAGGGTATATTTGATGCCATATTGAAAGGTCACATAGATTTTGTAAGTCAACCATGGCCAAGCATATCGAATAGTGCCAAGGACCTTGTTCGTAAAATGCTTATACAGGACCCAAAGAAACGCATCACTGCTGCTCAAGTTCTAGAGCACCCATGGATTAGAGAAGATGGAAATGCTTCTGACAAGCCAATTGACAGTGCAGTCCTCTCCAGATTGAAGCAATTCAGAGCAATGAATAAACTTAAGAAACTTGCTCTGAAGGTCATTGCTGAAAATCTCTCAAAAGAAGAGATTCAAGGGTTGAAGGTAATGTTTAAAAATATGGACACTGACAATAGCGGTACAATTACATATGAGGAACTTAAGGCGGGATTGCATAAACTAGGCTCAAAGCTCTCAGAGGCCGAAGTGCAGCAGCTTATGGATGCTGCTGATGTAGATGGAAATGGCTCTATTGACTACATAGAATTCATCACTGCAACAATGCATAGGCATAAGCTCGAAGCAGATGAGCATCTTTACAAAGCCTTCCAATATTTTGACAAGGATAATAGTGGGTTTATTACAAGAGATGAGCTTGAAACCGCCATGAAAGAATATGGGATGGGTGATGATGCTGCAATTAGGGAAATTTTATCAGAAGTTGATACAGATAACGATGGTAGAATTAACTATGAAGAGTTCTGTGCAATGATGAGGAGTGGAACCACCCAACAAGGCAAATTATTCTAA 1593 0.4187 MGCCLTKRRYSEPNYNGFRSVEPDGVHHQKIHEPYQLPAKPAATTTAAAAPWKPSVPAPSPKPIHKSDTILGKPYEDVKQYYTIGKELGRGQFGVTYLCTENSTGEQYACKSISKRKLTSKSDREDIKREIQIMQHLSGQPNIVEFKGAYEDKLSVHFVMELCAGGELFDRIIAKGHYCERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKGENATLKATDFGLSVFIEQGKVYRNIVGSAYYVAPEVLRRSYGKEIDVWSAGVMLYILLSGVPPFWAEKEKGIFDAILKGHIDFVSQPWPSISNSAKDLVRKMLIQDPKKRITAAQVLEHPWIREDGNASDKPIDSAVLSRLKQFRAMNKLKKLALKVIAENLSKEEIQGLKVMFKNMDTDNSGTITYEELKAGLHKLGSKLSEAEVQQLMDAADVDGNGSIDYIEFITATMHRHKLEADEHLYKAFQYFDKDNSGFITRDELETAMKEYGMGDDAAIREILSEVDTDNDGRINYEEFCAMMRSGTTQQGKLF 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1579 530 PANTHER SERINE/THREONINE-PROTEIN KINASE 77 515 - -
Lele28g1579 530 FunFam Calcium-dependent protein kinase 1 348 523 - -
Lele28g1579 530 FunFam calcium-dependent protein kinase 1 168 347 - -
Lele28g1579 530 Gene3D Phosphorylase Kinase; domain 1 83 167 - -
Lele28g1579 530 SMART serkin_6 82 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1579 530 ProSitePatterns EF-hand calcium-binding domain. 432 444 IPR018247 -
Lele28g1579 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Lele28g1579 530 Pfam Protein kinase domain 82 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1579 530 Pfam EF-hand domain pair 388 448 IPR002048 GO:0005509
Lele28g1579 530 Pfam EF-hand domain pair 458 520 IPR002048 GO:0005509
Lele28g1579 530 ProSitePatterns Protein kinases ATP-binding region signature. 88 111 IPR017441 GO:0005524
Lele28g1579 530 Coils Coil 405 425 - -
Lele28g1579 530 ProSitePatterns EF-hand calcium-binding domain. 468 480 IPR018247 -
Lele28g1579 530 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509
Lele28g1579 530 FunFam Calcium-dependent protein kinase 1 84 167 - -
Lele28g1579 530 CDD STKc_CAMK 82 339 - -
Lele28g1579 530 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
Lele28g1579 530 ProSiteProfiles EF-hand calcium-binding domain profile. 491 525 IPR002048 GO:0005509
Lele28g1579 530 SUPERFAMILY Protein kinase-like (PK-like) 81 346 IPR011009 -
Lele28g1579 530 SUPERFAMILY EF-hand 379 519 IPR011992 -
Lele28g1579 530 CDD EFh 462 520 IPR002048 GO:0005509
Lele28g1579 530 ProSiteProfiles Protein kinase domain profile. 82 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1579 530 Gene3D - 349 524 - -
Lele28g1579 530 ProSiteProfiles EF-hand calcium-binding domain profile. 419 454 IPR002048 GO:0005509
Lele28g1579 530 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Lele28g1579 530 Gene3D Transferase(Phosphotransferase) domain 1 168 348 - -
Lele28g1579 530 SMART efh_1 423 451 IPR002048 GO:0005509
Lele28g1579 530 SMART efh_1 459 487 IPR002048 GO:0005509
Lele28g1579 530 SMART efh_1 494 522 IPR002048 GO:0005509
Lele28g1579 530 SMART efh_1 387 415 IPR002048 GO:0005509
Lele28g1579 530 MobiDBLite consensus disorder prediction 43 69 - -
Lele28g1579 530 ProSitePatterns EF-hand calcium-binding domain. 503 515 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1579 Lele-ChrLele28 14526793 14530873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1579 1 526 EF-hand Containing Proteins AT3G20410 75.187 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele28g1579 Pkinase 6.4e-75 CL0016