Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1550 ATGCATGTTCCTCCTCTATTTGTTGTTCAACATCATGTTCAGGGTCTGAAATTTCCAGTGAGTAAACTTCCACCTCTTGAAAGGGACTTAGAATCTGCTTCGACTGGAATAACACTGAGGAATCAAAACCCTCTTTCTCCTTCGCAGAAGAAGCAAACACATAGCCAAAGTCTGCAGGGGCTGCGTTCTGTTAGGGTGTCTCGCTTGGTTGTGTTACTACAAGAGAGAATTTGCGATGATGAGCAAGTGCCTGTTTCATTTTCTGAATTGCCAGTCCAATGGAGTGAATCTGAGGATATAGATTGCGGAAGTGGGCAAGTGTTCCTTGACGGTTTTGCAGATAATGGGCTGCAGAAAGTGTTTAAGCATGTCTTTGCATGGAAGTTTGATGTTTCTGGTAAAAAACCTGAGATATCAGTGCTATTAAAGGGTAGACAATGGGTCAAACTTGAGAAGCCAAAGAAGTGGTTTGAGGATACCATAAGGACGGTTTTAATCACTATTCACTTCCTACATTATGTGCTGAAAAATCCTGAAACATCTGCTAAATCTTTGTGGGGCTACTTGTCTAAGGATTTGAGCTATTTTGAAGTTAAGCCTTCACAAAACGATTTGTTGAACCACTTACCTTTAATTGGTGAAGCTGTTAAAAGGAATGCCATCTTAAATAAGTCCCAGCTTTTACTCATGGTTCTTGAGAATCCGGGGAAAGTGAAAGTGCTTGATGAGGAAGCTGATAATTTAGCAAAGCCAGAGTTTATAGTTGGCGATGATGTCATTGATGAAGCTGATGATATAATTGATGAAGCTGCTGAAGAGTCAGATAAAGATGATGAATTGTTTGATTCTGTTTGTGTATTGTGTGATAATGGTGGTACATTGTTGTGTTGTGACGGAATATGCATGAGGTCGTTCCATGCAACAGAGGGGGATGGCGCAGAGGATGATGCAGATTGTGACTCTCTTGGATTTACTCAGGAGGAAGTCGATGAGATCCAGAGTTTTATATGCAAAAATTGTGAATATAACCAGCACCAATGCTTTGTATGTGGCAAGTTAGGAAACTCTAATAAATCCTCGCGTGCTGAGGTTTTTAAATGTGATGTTGCAACTTGTGGCCACTTTTACCATCTACGCTGTGTTGCAAAAGAACTTGGGAAAAATATAGCTGATGGAGAAAGTTTTATTTGTCCTATTCATTCGTGCTGCGTCTGTAACGAAAGAGAAGATAAGAAGAAACATGAATTTCAATTTGCTGTTTGTAGGCGTTGTCCTATAGCATATCATCGCCAATGTTTGCCAAGGGAGATTGCTTTCGAAGACAATGAAGAGGATATTCCGATAAGGGCTTGGGAAAACCTATTACCAAATAACCGCATACTTATATACTGTTTAAAGCATGAGCTTGATGAGGAACTTGGAACTCCAATAAGAGATCATATCCGATTTCCCAAGGTTAAACATGCTGTTGAGGAAATTGATCCTTCCTTAGAGGAAGGGACAAAGCCTTCAACGCAAAATAGAGTTCTGTCAAACAAAAATAATGTTGACCAAGATGATTCTACATGCAAACGAACCAATCCTAAAGGCTCTACACTGATGCAGAAATCATCTTCTAAGAGAGCTAGTTTAAAGAAAGAGTCTGAACATTTCATTTCTGGATCAAATGTCTCAAGGAAACGAAAAGCAAATGATGCAGTAGGGAGGCATTTGAATGAAAAGAAGAATTCAATCCCTCAAAAAAGTAAAATCTTCGATGGCAAGAAGAGTCAAGTCTCATTGGGCCAAAGACTGTTTGATGCTTCAATGACCAAGGGTTCTAAGAAAATAGAGAGTTTGGAGCATGAGGTTAATGGAGCTAATAAGTCCCTCCCTATGAAGCGTACTAACAAGGAGTTGAGTAATACATTTGCTCAACTAGACTCTGATACAGAGAGGAGATTGTTAGATTTGTTCAAAGAAGCTAAATCATCAATCTCTCTGGACGATGTATCTAAAAAGCTCAAATTTGCATCTACTCATGCTTCTTCCTTAAGAACTTGTGTGGAGAAGACCATTACTGCTGGGAAGTTGGAGGGCTCAGTTGATGCTGCCCGAACAGCTCTAAAGAGGCTAGATGAAGGAAAAAGTATTCAGGATGTCTCATCTGTTTGTGATCGTGATATATTGAATCAGATATTTAAATGGAGGGATAAATTGAGAGTGTATCTTGCACCCATTTTGCATGGTAACCGATACACATCCTATGGTCGCCATTTTATACAAGTGGGAAAACTTGAAGGGATTGTGGATAGGCTCCATTGGTACGTCCGAAGTGGTGATACGATTGTGGACTTCAGTTGTGGTGCTAATGACTTTAGCATCCTGATGAAGAAAAAGCTTGAAGAGACTGGGAAGGAATGCTTTTACAAAAACTACGATTTGCTTCCAACAAAGAATGATTTTTGTTTTGAAATGAGGGATTGGATGGAGGTCAAACCGAAGGAGCTGCCTAAAGGTTCACAATTGATTATGGGCCTCAATCCCCCATTCGGTGTTAATGGAGAGCTCGCTAACAAGTTCATCAATAAGGCTCTTAAGTTTCAACCAAAGCTCCTTATTCTTACCGTTCCGCGAGAGACAGAAAGGCTAGATAATAAACGACCCCCTTATGATCTTGTTTGGGAGGATGAGAACTTTCTGTCTGGCAAGTCATTTTATTTGCCTGGATCACTTGATATTAATGACAGACAAATGGATGATTGGAACAATACGCCACCGATATTGACAATTCAGGAACCAGAAAACTGTCTTCATCCAGATTCTAATTTCATGGTAGGACTGGTGATTCTTACCTGA 2838 0.3999 MHVPPLFVVQHHVQGLKFPVSKLPPLERDLESASTGITLRNQNPLSPSQKKQTHSQSLQGLRSVRVSRLVVLLQERICDDEQVPVSFSELPVQWSESEDIDCGSGQVFLDGFADNGLQKVFKHVFAWKFDVSGKKPEISVLLKGRQWVKLEKPKKWFEDTIRTVLITIHFLHYVLKNPETSAKSLWGYLSKDLSYFEVKPSQNDLLNHLPLIGEAVKRNAILNKSQLLLMVLENPGKVKVLDEEADNLAKPEFIVGDDVIDEADDIIDEAAEESDKDDELFDSVCVLCDNGGTLLCCDGICMRSFHATEGDGAEDDADCDSLGFTQEEVDEIQSFICKNCEYNQHQCFVCGKLGNSNKSSRAEVFKCDVATCGHFYHLRCVAKELGKNIADGESFICPIHSCCVCNEREDKKKHEFQFAVCRRCPIAYHRQCLPREIAFEDNEEDIPIRAWENLLPNNRILIYCLKHELDEELGTPIRDHIRFPKVKHAVEEIDPSLEEGTKPSTQNRVLSNKNNVDQDDSTCKRTNPKGSTLMQKSSSKRASLKKESEHFISGSNVSRKRKANDAVGRHLNEKKNSIPQKSKIFDGKKSQVSLGQRLFDASMTKGSKKIESLEHEVNGANKSLPMKRTNKELSNTFAQLDSDTERRLLDLFKEAKSSISLDDVSKKLKFASTHASSLRTCVEKTITAGKLEGSVDAARTALKRLDEGKSIQDVSSVCDRDILNQIFKWRDKLRVYLAPILHGNRYTSYGRHFIQVGKLEGIVDRLHWYVRSGDTIVDFSCGANDFSILMKKKLEETGKECFYKNYDLLPTKNDFCFEMRDWMEVKPKELPKGSQLIMGLNPPFGVNGELANKFINKALKFQPKLLILTVPRETERLDNKRPPYDLVWEDENFLSGKSFYLPGSLDINDRQMDDWNNTPPILTIQEPENCLHPDSNFMVGLVILT 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1550 945 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 444 IPR013083 -
Lele28g1550 945 ProSiteProfiles Zinc finger RING-type profile. 347 401 IPR001841 -
Lele28g1550 945 MobiDBLite consensus disorder prediction 525 539 - -
Lele28g1550 945 MobiDBLite consensus disorder prediction 38 59 - -
Lele28g1550 945 SMART PHD_3 402 468 IPR001965 -
Lele28g1550 945 SMART PHD_3 346 401 IPR001965 -
Lele28g1550 945 SMART PHD_3 284 341 IPR001965 -
Lele28g1550 945 CDD PHD3_NSD 401 434 - -
Lele28g1550 945 MobiDBLite consensus disorder prediction 494 582 - -
Lele28g1550 945 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 342 IPR013083 -
Lele28g1550 945 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 69 924 - -
Lele28g1550 945 CDD PHD2_NSD 346 400 - -
Lele28g1550 945 MobiDBLite consensus disorder prediction 540 582 - -
Lele28g1550 945 MobiDBLite consensus disorder prediction 499 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1550 Lele-ChrLele28 12826385 12858989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1550 273 381 PHD Transcription Factor Family AT3G14980 31.193 3.03e-06 49.3