Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1549 ATGGCGTCTTCGGATGATGAGGCCGAAGTTCATCCACAATCTGTGTCAAATTACCATTTTGAAGATGATGAGCAAGTGCCTGTTTCATTTTCTGAATTGCCAGTCCAATGGAGTGAATCTGAGGATATAGACTGCGGAAGTGGGCAAGTGTTCCTTGACGGTTTTGCAGATAATGGGCTGCAGAAAGTGTTTAAGCACGTCGTTGCATGGAAGTTTGATGTTTCTGGTAAAAAACCTGAGATGTCAGTGCTATTAAAGGGTAGACAATGGGTCAAACTTGAGAAGCCAAAGAAGTGGTTTGAGGGTACCATTAGGACGGTTTTAATCACTATTCACTTCCTACATTATGTGCAGAAAAATCCTGAAACATCTGCTAAATCTTTGTGGGGCTACTTGTCTAAGTATCTGAGCTATTTTGAAGTTAGGCCTTCACAAAACGATTTGTTGAACCACTTACCTTTAATTGGGGAAGCTGTTAAAAGGAATGGCATCTTAAATAAGTCCCAGCTTTTACTCATGGTTCTTGAGAATCCGGGGAAAGTCAAAGTGCTTGATGAGGAAGCTGATAATTTAGCAAAGCCAGAGTTTATAGTTGGCGATAATGTCATTGATGAAGCTGATGATATAATTGATGAAGTTGCTGAAGAGTCAGATAAAGATGAATTGTTTGATTCTGTTTGTGTATTGTGTGACGATGGTGGTACATTGTTGTGTTGTGACGGAATATGCATGAGGTCGTTCCATGCAACAGAGAAGGATGTTGAAGCGGATAATGCAAAATGTGACTCTCTTGGTTTTACTCGGGAGGAAGTGGATGAGATCCAGAGTTTTATATGCAAAAATTGTGAATATAACCAACACCAGTGCTTTGTATGTGGCCAGTTAGGAAACTCTAATAAATCCTCGCATGCTGAGGTTTTTAAATGTGATGTTGCAACTTGTGGCCACTTTTACCATCTACACTGTGTTGCAAAAGAACTTGGGAAAAATATTGCTGATGGAGAAAGTTTTATTTGTCCTATTCATTCGTGCTGCGTCTGTAAGGAAAGAGAAGATAAGAACGAACATGAATTTCAATTTGCTGTTTGTAGGCGTTGTCCTATAGCATATCATCGCAAATGTTTGCCAAGAAAACATGAGCTTGATGAGGAACTTGGAACTCCAATAGGAGATCATATCCAATTTCCCAAGGTTAAACATGCTGTTGAGGAAATTGATTCTTCCTTAGAGGAAGAGACAAAGCCTTCCACACAAGATAGAGTTCTGTCAAACAAAAATAATGTTGACCAAGATGATTCTACATGCAAACGAATTAATCCTGAAGGCTCTACACTGATTCAGAAATCATCTTCTAAGAGAGCTAGTTTAAAGAAAGAGTCTGAACATATCATTTCTGGATCAAATGTCTCAAGGAAACGAAAAGCAAATGATACAGTAGGGAGGCATCTGAATGAAAAGAAGAATTCAATCCCTAAGAAAAGTAAAATCCTCGATGGCAAGAGTCAAGTCTCATTGGGCCAAAGACCATGTGATGCTTCCATTACCAAGGGTTCTAAGAAAATTGAGTTTGGAGAGCGTGAGGTTAATGGTGCTAATAAGTCCCTCCTTGTTAAGCGTACTAACAAGGAGTTGAGTAATACATCCACTCAAATAGACTCTGATACAGAGAGGAGATTGCTAGATTTGTTCAAAGAAGCTACATCATCAATCTCTTTGGATGATGTATCGAAAAAGTTCAAATTTGCATCTACTCATGCTTCTTCCTTAAGAACTTATGTGGAGAAGACCATTACCTCTGGGAAGTTGGAGGGCTCAGTTGATGTAGCTGCCCGGACAGCTCTAAAGAGGCTAGATGAAGGAAAAAGTATTCAGGATGCCGCATCTGTTTGTGATCGCACTATCAGGACAATGAGTACTTCTGGGATCATGTCTACACATGCATGTGCGATTGGGATCTGTGCTTGCTTTGATACCACGACTTTAATATGGTTAAGTGCAACTATTTTGGGGATTTTTACTATGTTTATTTGTGCGGAGATGGGTATTAGAAGAATGCTCAAAACATCTATTGTTAACATTGCTTGTGATAAATTGAGAGTGTATCTTGCACCCATTTTGAATGGTAATCGATATACATCCTATGGTCGCCATTTTACACAAGTGGAAAAACTCGAAAGGAAGAATTTGACATTTCTGCCCTGCTGTGACACTATGAAGAAGACAAGGGAAGATGGGATTGTGGACTTCAGTTGTGGTGCTAATGATTTTAGCATCCTGATGAAGAAAAAGCTCGGAGAGACTGGGAAGGAATGCTTTTACAAAAACTACGATTTGCTTCCAACAAAGAATGATTTTTGTTTTGAAATGAGGGATTGGATGGAGGTCAAACCGAAGGAGCTGCCTAAAGGTTCACAATTGATTATGGGCCTCAATCCCCCCTTCGGTGTTAATGGAGAGCTCGCTAACAAGTTCATCAATAAGGCTCTTAAGTTTCAACCAAAGCTCCTTATTCTTACTGTTCCGCGGACGACAGAAAGGCTAGATAATAAACGACCCCCTTATGATCTTGTTTGGGAGGATGAGAACTTTCTGTCAGGCAAGTCATTTTATTTGCCTGGATCACTTGATATTAATGACAGACAAATGGATGATTGGAACAATACGCCACCGATATTGTATCTTTGGAGCCGTCAAGATTGGACTGATAAACACAAGTCTATAGCCCAAGAGCATGGTCATGTTCCCAAACAACATGATGCATTGATAGAAAAGAGGCTTGATGAAATTTCACCTGCTGATCATGTTATGGATGGACAATTCAGGTTCTCACCATGTCAATGTCAATACTTCGATTTAGGAACCGGAAACCTTTCTCTTCATCCAGATTCCAATTTCATGGTTAGGAGGAACGTTGGAGATGGGATTGCTCAATTCTTAACATCATAG 2946 0.3982 MASSDDEAEVHPQSVSNYHFEDDEQVPVSFSELPVQWSESEDIDCGSGQVFLDGFADNGLQKVFKHVVAWKFDVSGKKPEMSVLLKGRQWVKLEKPKKWFEGTIRTVLITIHFLHYVQKNPETSAKSLWGYLSKYLSYFEVRPSQNDLLNHLPLIGEAVKRNGILNKSQLLLMVLENPGKVKVLDEEADNLAKPEFIVGDNVIDEADDIIDEVAEESDKDELFDSVCVLCDDGGTLLCCDGICMRSFHATEKDVEADNAKCDSLGFTREEVDEIQSFICKNCEYNQHQCFVCGQLGNSNKSSHAEVFKCDVATCGHFYHLHCVAKELGKNIADGESFICPIHSCCVCKEREDKNEHEFQFAVCRRCPIAYHRKCLPRKHELDEELGTPIGDHIQFPKVKHAVEEIDSSLEEETKPSTQDRVLSNKNNVDQDDSTCKRINPEGSTLIQKSSSKRASLKKESEHIISGSNVSRKRKANDTVGRHLNEKKNSIPKKSKILDGKSQVSLGQRPCDASITKGSKKIEFGEREVNGANKSLLVKRTNKELSNTSTQIDSDTERRLLDLFKEATSSISLDDVSKKFKFASTHASSLRTYVEKTITSGKLEGSVDVAARTALKRLDEGKSIQDAASVCDRTIRTMSTSGIMSTHACAIGICACFDTTTLIWLSATILGIFTMFICAEMGIRRMLKTSIVNIACDKLRVYLAPILNGNRYTSYGRHFTQVEKLERKNLTFLPCCDTMKKTREDGIVDFSCGANDFSILMKKKLGETGKECFYKNYDLLPTKNDFCFEMRDWMEVKPKELPKGSQLIMGLNPPFGVNGELANKFINKALKFQPKLLILTVPRTTERLDNKRPPYDLVWEDENFLSGKSFYLPGSLDINDRQMDDWNNTPPILYLWSRQDWTDKHKSIAQEHGHVPKQHDALIEKRLDEISPADHVMDGQFRFSPCQCQYFDLGTGNLSLHPDSNFMVRRNVGDGIAQFLTS 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1549 981 Pfam Cytosine specific DNA methyltransferase replication foci domain 14 134 IPR022702 -
Lele28g1549 981 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 921 - -
Lele28g1549 981 MobiDBLite consensus disorder prediction 452 494 - -
Lele28g1549 981 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 366 IPR013083 -
Lele28g1549 981 MobiDBLite consensus disorder prediction 406 511 - -
Lele28g1549 981 CDD PHD2_NSD 288 342 - -
Lele28g1549 981 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 285 IPR013083 -
Lele28g1549 981 SMART PHD_3 344 439 IPR001965 -
Lele28g1549 981 SMART PHD_3 226 283 IPR001965 -
Lele28g1549 981 SMART PHD_3 288 343 IPR001965 -
Lele28g1549 981 ProSiteProfiles Zinc finger RING-type profile. 289 343 IPR001841 -
Lele28g1549 981 MobiDBLite consensus disorder prediction 437 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1549 Lele-ChrLele28 12764668 12786204 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1375 01 8454751 8460801 Lele28g1549 28 12764668 12786204 CCT
Lele02g1656 02 20310490 20315900 Lele28g1549 28 12764668 12786204 CCT
Lele03g1386 03 8365550 8369882 Lele28g1549 28 12764668 12786204 CCT
Lele04g1642 04 21244082 21248349 Lele28g1549 28 12764668 12786204 CCT
Lele26g1557 26 12138729 12165058 Lele28g1549 28 12764668 12786204 hybridization