Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1538 ATGCCTGAACGAGAAATTTGCAGTTCAATGAAGGAATCTCGTCTTGTTGCGAAGAAATTCTCGGCCAGGCCTCAGCGTGAAGGTGTTGGCGCCGTTGTTAGAAGAAGCATCGGACGATTTGAGCTCAAGTACTTTGATCCTTTTCTGTTGTTGGATGAATTCTCAGTTTCTGCTCCAGCTGGGTTCCCTGATCATCCACATAGAGGGTTCGAGACAGTCACATATATGTTGCAGGGAGCTATAACACATGAGGATTTTGAAGGGCACAAAGGAACTATTGAGGCAGGTGACTTGCAGTGGATGACTGCAGGGAAGGGGATAGTTCACTCAGAGATGCCTGCAGCTCATGGAATTCAAAAGGGTCTACAGCTTTGGATCAATCTAGCTTCCAATGATAAAATGATTGAGCCAAGGTATCAAGAAATGTTAAGCAAGGACATAGCAGAAGTAGAGGAAAGTGGAATTAAAGTAAGGGTTATAGCAGGAGAAGCCTTAGGAACAAAGTCTCCAATCCAAACATTTACTCCAACAATGTACTTAGACTTCTCTCTCAAATCTGGGGCCCACTTGCAGCAACCTATTCCAAAGTCATGGAATGCTTTTGTCTATGTTTTGGAAGGAGAAGGCGTATTTGGCGACATGAAAACTCAACCTGTCTCTTCACACCATATTCTTCTTCTTGGTTCTAATGGGGATGGTCTTGAGGTATGGAACAAGTCTTGTAATAATAATAATAAGGTTCTTAGGTTTGTTCTTGTTGGAGGACAACCATTGGGTGAACCTGTGGCTCAGTTTGGACCATTTGTGATGAACACACAGGAAGAGATTGATCAAACCATTGATGATTATGAGAATTCTGTAAATGGGTTTGAGAAAGCTAGGCATTGGAAGTCTGAAGCTGCAATTAGTCTTGATTTTTAA 921 0.4235 MPEREICSSMKESRLVAKKFSARPQREGVGAVVRRSIGRFELKYFDPFLLLDEFSVSAPAGFPDHPHRGFETVTYMLQGAITHEDFEGHKGTIEAGDLQWMTAGKGIVHSEMPAAHGIQKGLQLWINLASNDKMIEPRYQEMLSKDIAEVEESGIKVRVIAGEALGTKSPIQTFTPTMYLDFSLKSGAHLQQPIPKSWNAFVYVLEGEGVFGDMKTQPVSSHHILLLGSNGDGLEVWNKSCNNNNKVLRFVLVGGQPLGEPVAQFGPFVMNTQEEIDQTIDDYENSVNGFEKARHWKSEAAISLDF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1538 306 CDD cupin_pirin_N 31 128 - -
Lele28g1538 306 Gene3D Jelly Rolls 27 284 IPR014710 -
Lele28g1538 306 SUPERFAMILY RmlC-like cupins 14 298 IPR011051 -
Lele28g1538 306 CDD cupin_pirin_C 176 257 - -
Lele28g1538 306 FunFam pirin 27 165 - -
Lele28g1538 306 PIRSF Pirin 12 297 IPR012093 -
Lele28g1538 306 Gene3D Jelly Rolls 148 258 IPR014710 -
Lele28g1538 306 PANTHER PIRIN-RELATED 7 300 IPR012093 -
Lele28g1538 306 Pfam Pirin C-terminal cupin domain 179 287 IPR008778 -
Lele28g1538 306 Pfam Pirin 33 126 IPR003829 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1538 Lele-ChrLele28 12403631 12407665 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1538 14 294 Calmodulin-binding Proteins AT3G59220 57.447 2.47e-120 345