Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1533 ATGCCTGAACGAGAAATTTGCAGTTCAATGAAGGAATCTCGTCTTGTTGCGAAGAAATTCTTGGCCAGGCCTCAGCGTGAAGGTGTTGGCGCCGTTGTTAGAAGAAGCATCGGACGATTTGAGCTCAGGTACTTTGATCCTTTTCTGTTGTTGGATGAATTCTCAGTTTCTGCTCCAGCTGGGGTTCGAGACAGTCACAATGTCACATATATGTTGCAGGGAGCTATAACACATGAGGATTTTGAAGGGCACAAAGGAACTATTGAGGCAGGTGACTTGCAGTGGATGACTGCAGGGAAGGGGATAGTTCACTCAGAGATGCCTGCAGCTCATGGAATTCAAAAGGGTCTACAGCTTTGGATCAATCTAGCTTCCAATGATAAAATGATTGAGCCAAGGTATCAAGAAATGTTAAGCAATGACATAGCAGAAGTAGAGGAAAGTGGAATTAAAGTAAGGGTTATAGCAGGAGAAGCCTTAGGAACAAAGTCTCCAATCCAAACAATTACTCCAACAATGTACTTAGATTTCTCTCTCAAACCTGGGGCCCACTTGCAGCAACCTATTCCAAAGTCATGGAATGCTTTTGTCTATGTTTTGGAAGGAGAAGGCGTGTTTGGCGACATGAAAACTCAACCTGTCTCTTCACACCATATTCTTCTTCTTGGTTCTAATGGGGATGGTCTTGAGGTATGGAACAAGTCTTGTAATAATAATAATAAGGTTCTTAGGTTTGTTCTTGTTGGAGGGCAACCATTGGGTGAACCTGTGGCTCAGTTTGGACCATTTGTGATGAACACACAAGAAGAGATTGATCAAACCATTGATGATTATGAGAATTCTGTAAATGGGTTTGAGAAAGCTAGGCATTGGAAGTCTGAAGCTGCAATTAGTCTTGATTTTTAA 906 0.4216 MPEREICSSMKESRLVAKKFLARPQREGVGAVVRRSIGRFELRYFDPFLLLDEFSVSAPAGVRDSHNVTYMLQGAITHEDFEGHKGTIEAGDLQWMTAGKGIVHSEMPAAHGIQKGLQLWINLASNDKMIEPRYQEMLSNDIAEVEESGIKVRVIAGEALGTKSPIQTITPTMYLDFSLKPGAHLQQPIPKSWNAFVYVLEGEGVFGDMKTQPVSSHHILLLGSNGDGLEVWNKSCNNNNKVLRFVLVGGQPLGEPVAQFGPFVMNTQEEIDQTIDDYENSVNGFEKARHWKSEAAISLDF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1533 301 CDD cupin_pirin_C 171 252 - -
Lele28g1533 301 Gene3D Jelly Rolls 143 253 IPR014710 -
Lele28g1533 301 Pfam Pirin C-terminal cupin domain 174 282 IPR008778 -
Lele28g1533 301 Pfam Pirin 35 121 IPR003829 -
Lele28g1533 301 PIRSF Pirin 12 292 IPR012093 -
Lele28g1533 301 PANTHER PIRIN-RELATED 7 295 IPR012093 -
Lele28g1533 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Lele28g1533 301 CDD cupin_pirin_N 31 123 - -
Lele28g1533 301 Gene3D Jelly Rolls 27 279 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1533 Lele-ChrLele28 12222949 12227008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1533 14 289 Calmodulin-binding Proteins AT3G59220 54.610 2.05e-110 320