Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1517 ATGTATGGATTCATTCATGCCTTGAGCCGCATCACCGACTTAATTGGGCATGACTCGGTGGAATTGTCGACGCAAACCAGACAGTCTTCGTTTTCTTTGAGACATACCCCTGATTGCTCGATTCCATTGCCTTTCTTTCAAGTTCAGCGGCTTCTTCACAAAGGCTTCAGGTTTCGATTCTCCGAAATGAATCACTCGGACATTGAAAATATCGATGAAACTAGTATAAATTGGGAACAAGCTCTGAGTCAGTATGAAATGGTGATGTGCTCGGGGACTAAGAATATGCAAATAGAAGCCATGAAGAAGCTAGCTCGTCTCTCTAAACATGCCCCTGAGAGTTTAATAGTTCGCATCCTACCTCATCTCATTGAGAATCTCGATGACTACAATTCAATTCATTCAGGTTGTTCTCTTCAAAAGGCTTCTGCTTATTGCTTAAAATGTGTAGCTTGTAGAGGTGATGGTGGGTTGGCAAAGGAAATAGGTAGACGTGGTGCAGCAAGTTCTTTGTTATGGTGGTTGCCACATTCCGATGGGGAGTTTCAAGAAGTCCTGATAAAATGTTTGCTTGTTCTTGTTACTTTTTGCAATTCAAGTCGTGCAGTTGTCGCTAGTAATGGCGGTGTAGAAGTTATCATCAGTTTGTTAAATTCTTGCACAGGTGATATTAGACTATACCTTTTGGAAATTTTGAGTGCATTGGCATTGTTGAGGGATGTTAGGAGAGCACTCACTAGATTAGGAAGTCTTAAATTTCTTGTGGAGGCTGCTAGTTGTGGTAGCATGGTTTCTAGGGAAAGAGCTTGTCAAGCAATCGGGTTACTTGGTGTCCCAAGACGGGCCAGGCGTACACTAGTTGAACTAGGAGTGATTCCAGTACTTGTTGAGTGTCTTCGTCATGGAGATCACATCATGAAACTTGTAGCTGGTAATGCCCTTGGTGTGATCTCTGCTCATATTGATTATATTAGATTAGTTGCTCAATCTGGGGTTATCAGTCTTTATGCTGAGCTTCTTCAAGGACCTGACCCGTCTGGTAAGGAGATTGCTGAGGATGTATTTTGTATATTGGCTGTTGCTGAGGAGAATGCTGTTGAAATCACCAGACACTTGGTGAGAATTCTTAGAGAAGGTGACGATGAATCAAAGGCATCTGCTGCTGATGTGTTATGGGATCTGGCAAGTTACAAGCACGCAACTTCTTTGGTCCGGGAGTCAGGTGTGATTCCAATTCTGGTTGAGCTTTTGCCTAGTGGAAATGAAGAGATAAAGCAGAATGTTTCTGGGGCTTGTGCACAACTGAGCTATGATGAGGCAGATAGAATGGCACTTGCTGAATCAGGGGCAATCCCAATTCTCATTGAAATGATGCTGCATGATGAGTTGGAGGAAGTAAGGGATAATGCAGCTGAGGCTCTTGTCAACTTTGCTGAAGATCCTTTGTACCATGATAGAGTATCTGATGCAATAAGTGTTCCTTCATTTAGAGATATGCAGAACAGATTACTTCACATTCGTGCTTCAAATGAGCACATGGCTAGATCGTTACGAAGGATGACTGATTGGCAGCTGACATGGAACCCTGATAGTATTTAA 1599 0.4271 MYGFIHALSRITDLIGHDSVELSTQTRQSSFSLRHTPDCSIPLPFFQVQRLLHKGFRFRFSEMNHSDIENIDETSINWEQALSQYEMVMCSGTKNMQIEAMKKLARLSKHAPESLIVRILPHLIENLDDYNSIHSGCSLQKASAYCLKCVACRGDGGLAKEIGRRGAASSLLWWLPHSDGEFQEVLIKCLLVLVTFCNSSRAVVASNGGVEVIISLLNSCTGDIRLYLLEILSALALLRDVRRALTRLGSLKFLVEAASCGSMVSRERACQAIGLLGVPRRARRTLVELGVIPVLVECLRHGDHIMKLVAGNALGVISAHIDYIRLVAQSGVISLYAELLQGPDPSGKEIAEDVFCILAVAEENAVEITRHLVRILREGDDESKASAADVLWDLASYKHATSLVRESGVIPILVELLPSGNEEIKQNVSGACAQLSYDEADRMALAESGAIPILIEMMLHDELEEVRDNAAEALVNFAEDPLYHDRVSDAISVPSFRDMQNRLLHIRASNEHMARSLRRMTDWQLTWNPDSI 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1517 532 SUPERFAMILY ARM repeat 204 484 IPR016024 -
Lele28g1517 532 Coils Coil 460 480 - -
Lele28g1517 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 408 450 IPR000225 GO:0005515
Lele28g1517 532 SMART arm_5 279 319 IPR000225 GO:0005515
Lele28g1517 532 SMART arm_5 397 437 IPR000225 GO:0005515
Lele28g1517 532 SMART arm_5 438 479 IPR000225 GO:0005515
Lele28g1517 532 SMART arm_5 353 396 IPR000225 GO:0005515
Lele28g1517 532 SMART arm_5 197 237 IPR000225 GO:0005515
Lele28g1517 532 Pfam HEAT repeats 370 474 - -
Lele28g1517 532 SUPERFAMILY ARM repeat 91 236 IPR016024 -
Lele28g1517 532 Gene3D - 370 512 IPR011989 -
Lele28g1517 532 Gene3D - 73 369 IPR011989 -
Lele28g1517 532 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 372 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1517 Lele-ChrLele28 11907013 11909865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1517 283 494 U-box Gene Family AT2G23140 26.941 6.28e-11 63.2