Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1504 ATGGCTGTTTCTTCCATATCTTCGTCATTAGTTCCTTCTCTTTCACTCATCTCATCTTCTTACCTGAATTATAAAGCAAACTTCTCCTTTTCCTTGTTCCATACTGGTACTAACACCTTTAAGCTTCAAAGCAGCTCAAAACCTCTGCTATCATCAACTAGGGTTTATGCTGCTCCCGAAGTGTTGGATTCCCCAGATTCCGCTGCAGTTCCTCCATTAACCCCAGATGACTCCGACTCCACTATTGAGGTTGGAGACTTGGGGACTCCAAGCACCTCGTCTCTTAGCATTAGTGCAGATGCAGATGCGATGGCACCAAAGCAGAAAATTAGAATAAAACTGAGATCTTATTGGGTTCCCCTGATAGAGGATTCATGCAAGCAGATAATGGATGCAGCCAAAAGTACCAATGCAAAAACCATGGGTCCTGTACCATTACCAACGAAGAAAAGAATCTACTGTGTTCTTAAATCTCCACATGTGAACAAGGATGCCCGGTTCCATTTTGAGACAAGAACCCATCAGCGTCTCATTGATATTCTACATCCCACTGCCCAAACAGTAGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAAGTCAAACTCTAA 621 0.4316 MAVSSISSSLVPSLSLISSSYLNYKANFSFSLFHTGTNTFKLQSSSKPLLSSTRVYAAPEVLDSPDSAAVPPLTPDDSDSTIEVGDLGTPSTSSLSISADADAMAPKQKIRIKLRSYWVPLIEDSCKQIMDAAKSTNAKTMGPVPLPTKKRIYCVLKSPHVNKDARFHFETRTHQRLIDILHPTAQTVDSLMQLDLPAGVDVEVKL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1504 206 Pfam Ribosomal protein S10p/S20e 111 205 IPR027486 -
Lele28g1504 206 Gene3D Ribosomal protein S10 domain 97 206 IPR036838 -
Lele28g1504 206 SUPERFAMILY Ribosomal protein S10 109 206 IPR036838 -
Lele28g1504 206 PRINTS Ribosomal protein S10 family signature 109 122 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele28g1504 206 PRINTS Ribosomal protein S10 family signature 165 179 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele28g1504 206 PRINTS Ribosomal protein S10 family signature 144 159 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele28g1504 206 MobiDBLite consensus disorder prediction 66 94 - -
Lele28g1504 206 Hamap 30S ribosomal protein S10 [rpsJ]. 107 206 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele28g1504 206 TIGRFAM rpsJ_bact: ribosomal protein uS10 108 205 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele28g1504 206 FunFam 30S ribosomal protein S10 104 206 - -
Lele28g1504 206 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 63 206 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele28g1504 206 SMART Ribosomal_S10_2 111 205 IPR027486 -
Lele28g1504 206 ProSitePatterns Ribosomal protein S10 signature. 133 148 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1504 Lele-ChrLele28 11452041 11454796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1504 108 206 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 33.000 7.37e-08 47.8