Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1495 ATGGCGGACTCGGATAACGATTCCGGAGGTGCTCCGAACTCGGGGAACAATGCGAACAGCAGCGAACTCTCGCTGCGAGAGCAAGACCGGTTTCTACCAATAGCGAATGTGAGCAGGATCATGAAAAAGGCTCTTCCAGCTAATGCGAAGATCTCGAAGGACGCTAAGGAGACAGTACAAGAATGCGTATCGGAGTTCATCAGCTTCATCACAGGCGAGGCCTCCGACAAGTGCCAGAGAGAGAAACGGAAGACCATCAATGGCGACGATTTGCTTTGGGCTATGACGACTTTAGGATTTGAAGACTATGTGGAGCCGCTCAAGATATACCTTCAGAGATTCAGGGAAATGGAAGGCGAGAAGAGCGTGGCTACACGTGACAAGGACGGTGGTGTCGGAGGCATGAACGCTGCCAATAGTGGCTACGACGGAGGAGGAGGAGGAGGAGGCGGCGGTGATGGAGTGTATGGAGGAGTAGGGATGATGATGCATCGGGGACACGTGTACGGATCTGGGGGGTTTCATCCAATGGCTGTAAGCGGAGGAAGTGGTCCTCCTGTTATGGGGAAGAGTGGGCCCAGTTATCCTAGTGCCGGATCTAATTCAGGCAGGCCCAGATAG 621 0.5362 MADSDNDSGGAPNSGNNANSSELSLREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKSVATRDKDGGVGGMNAANSGYDGGGGGGGGGDGVYGGVGMMMHRGHVYGSGGFHPMAVSGGSGPPVMGKSGPSYPSAGSNSGRPR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1495 206 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Lele28g1495 206 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Lele28g1495 206 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Lele28g1495 206 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele28g1495 206 MobiDBLite consensus disorder prediction 7 25 - -
Lele28g1495 206 SUPERFAMILY Histone-fold 28 127 IPR009072 GO:0046982
Lele28g1495 206 MobiDBLite consensus disorder prediction 181 206 - -
Lele28g1495 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Lele28g1495 206 MobiDBLite consensus disorder prediction 1 25 - -
Lele28g1495 206 FunFam Nuclear transcription factor Y subunit B-3 20 142 - -
Lele28g1495 206 Gene3D Histone, subunit A 19 139 IPR009072 GO:0046982
Lele28g1495 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 126 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1495 Lele-ChrLele28 11337149 11337769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1495 1 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.677 8.74e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele28g1495 CBFD_NFYB_HMF 2e-27 CL0012